相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。An expedient survey and characterization of the soybean JAGGED 1 (GmJAG1) transcription factor binding preference in the soybean genome by modified ChIPmentation on soybean protoplasts
Mingkun Huang et al.
GENOMICS (2021)
Genomic basis of geographical adaptation to soil nitrogen in rice
Yongqiang Liu et al.
NATURE (2021)
Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection
Anat Hendelman et al.
CELL (2021)
Altered chromatin architecture and gene expression during polyploidization and domestication of soybean
Longfei Wang et al.
PLANT CELL (2021)
Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts(1[OPEN])
Xiao Lin et al.
PLANT PHYSIOLOGY (2020)
The histone modification H3K4me3 marks functional genes in soybean nodules
Qianwen Wang et al.
GENOMICS (2020)
MH-seq for Functional Characterization of Open Chromatin in Plants
Shentong Tao et al.
TRENDS IN PLANT SCIENCE (2020)
Applications of CRISPR-Cas in agriculture and plant biotechnology
Haocheng Zhu et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2020)
3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize
Yonghao Sun et al.
GENOME BIOLOGY (2020)
A reference-grade wild soybean genome
Min Xie et al.
NATURE COMMUNICATIONS (2019)
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants
Chi-Nga Chow et al.
NUCLEIC ACIDS RESEARCH (2019)
Widespread long-range cis-regulatory elements in the maize genome
William A. Ricci et al.
NATURE PLANTS (2019)
The prevalence, evolution and chromatin signatures of plant regulatory elements
Zefu Lu et al.
NATURE PLANTS (2019)
Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq
Miriam Tannenbaum et al.
PLANT METHODS (2018)
The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family
Mary Galli et al.
NATURE COMMUNICATIONS (2018)
Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
Zefu Lu et al.
NUCLEIC ACIDS RESEARCH (2017)
Towards genome-wide prediction and characterization of enhancers in plants
Alexandre P. Marand et al.
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2017)
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Rurika Oka et al.
GENOME BIOLOGY (2017)
Transcription factor-DNA binding: beyond binding site motifs
Sachi Inukai et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2017)
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Mihaela Pertea et al.
NATURE PROTOCOLS (2016)
Plant Enhancers: A Call for Discovery
Blaise Weber et al.
TRENDS IN PLANT SCIENCE (2016)
Genome-Wide Prediction and Validation of Intergenic Enhancers in Arabidopsis Using Open Chromatin Signatures
Bo Zhu et al.
PLANT CELL (2015)
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
Simone Picelli et al.
GENOME RESEARCH (2014)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Identification of a functional transposon insertion in the maize domestication gene tb1
Anthony Studer et al.
NATURE GENETICS (2011)
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz et al.
NATURE (2010)
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
Andrew Adey et al.
GENOME BIOLOGY (2010)
MEME SUITE: tools for motif discovery and searching
Timothy L. Bailey et al.
NUCLEIC ACIDS RESEARCH (2009)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
FAIRE ((F)under-barormaldehyde-(A)under-barssisted (I)under-barsolation of (R)under-baregulatory (E)under-barlements) isolates active regulatory elements from human chromatin
Paul G. Giresi et al.
GENOME RESEARCH (2007)