4.8 Article

Chromatin structure-dependent histone incorporation revealed by a genome-wide deposition assay

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

FACT caught in the act of manipulating the nucleosome

Yang Liu et al.

NATURE (2020)

Article Biochemistry & Molecular Biology

Two HIRA-dependent pathways mediate H3.3 de novo deposition and recycling during transcription

Julia Torne et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2020)

Article Multidisciplinary Sciences

Genome-wide chromatin accessibility is restricted by ANP32E

Kristin E. Murphy et al.

NATURE COMMUNICATIONS (2020)

Review Genetics & Heredity

The histone variant H2A.Z in gene regulation

Benedetto Daniele Giaimo et al.

EPIGENETICS & CHROMATIN (2019)

Article Biochemistry & Molecular Biology

A versatile mouse model of epitope-tagged histone H3.3 to study epigenome dynamics

Mahesh Bachu et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2019)

Article Biochemistry & Molecular Biology

Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming

Patrick J. Murphy et al.

Review Biochemistry & Molecular Biology

Synthetic post-translational modification of histones

Simon Nadal et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2018)

Article Multidisciplinary Sciences

High-resolution visualization of H3 variants during replication reveals their controlled recycling

Camille Clement et al.

NATURE COMMUNICATIONS (2018)

Article Multidisciplinary Sciences

PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex

Stephanie Link et al.

NATURE COMMUNICATIONS (2018)

Review Cell Biology

Variants of core histones and their roles in cell fate decisions, development and cancer

Marcus Buschbeck et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Dual function of Swc5 in SWR remodeling ATPase activation and histone H2A eviction

Lu Sun et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Multidisciplinary Sciences

DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes

Stephan Nothjunge et al.

NATURE COMMUNICATIONS (2017)

Review Cell Biology

Replication timing and transcriptional control: beyond cause and effect - part III

Juan Carlos Rivera-Mulia et al.

CURRENT OPINION IN CELL BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Structural evidence for Nap1-dependent H2A-H2B deposition and nucleosome assembly

Carmen Aguilar-Gurrieri et al.

EMBO JOURNAL (2016)

Article Cell Biology

Integrated molecular mechanism directing nucleosome reorganization by human FACT

Yasuo Tsunaka et al.

GENES & DEVELOPMENT (2016)

Article Biochemistry & Molecular Biology

Structural basis of H2A.Z recognition by SRCAP chromatin-remodeling subunit YL1

Xiaoping Liang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Molecular basis and specificity of H2A.Z-H2B recognition and deposition by the histone chaperone YL1

Chrysa M. Latrick et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Structural basis of H2A.Z recognition by SRCAP chromatin-remodeling subunit YL1

Xiaoping Liang et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

Molecular basis and specificity of H2A.Z-H2B recognition and deposition by the histone chaperone YL1

Chrysa M. Latrick et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)

Article Biochemistry & Molecular Biology

FACT Disrupts Nucleosome Structure by Binding H2A-H2B with Conserved Peptide Motifs

David J. Kemble et al.

MOLECULAR CELL (2015)

Article Multidisciplinary Sciences

Integrative analysis of 111 reference human epigenomes

Anshul Kundaje et al.

NATURE (2015)

Article Biochemical Research Methods

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim et al.

NATURE METHODS (2015)

Article Multidisciplinary Sciences

Histone chaperone Anp32e removes H2A.Z from DNA double-strand breaks and promotes nucleosome reorganization and DNA repair

Ozge Gursoy-Yuzugullu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Genetics & Heredity

Tissue-specific expression of histone H3 variants diversified after species separation

Kazumitsu Maehara et al.

EPIGENETICS & CHROMATIN (2015)

Review Genetics & Heredity

Constitutive heterochromatin formation and transcription in mammals

Nehme Saksouk et al.

EPIGENETICS & CHROMATIN (2015)

Article Cell Biology

HJURP Involvement in De Novo CenH3CENP-A and CENP-C Recruitment

Hiroaki Tachiwana et al.

CELL REPORTS (2015)

Article Biochemistry & Molecular Biology

Mislocalization of the Centromeric Histone Variant CenH3/CENP-A in Human Cells Depends on the Chaperone DAXX

Nicolas Lacoste et al.

MOLECULAR CELL (2014)

Article Multidisciplinary Sciences

ANP32E is a histone chaperone that removes H2A.Z from chromatin

Arnaud Obri et al.

NATURE (2014)

Article Biochemistry & Molecular Biology

deepTools: a flexible platform for exploring deep-sequencing data

Fidel Ramirez et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Genetics & Heredity

Chromatin accessibility: a window into the genome

Maria Tsompana et al.

EPIGENETICS & CHROMATIN (2014)

Article Cell Biology

Quantitative ChIP-Seq Normalization Reveals Global Modulation of the Epigenome

David A. Orlando et al.

CELL REPORTS (2014)

Article Biochemical Research Methods

Structural polymorphism in the L1 loop regions of human H2AZ1 and H2AZ2

Naoki Horikoshi et al.

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)

Article Cell Biology

Placing the HIRA Histone Chaperone Complex in the Chromatin Landscape

Nikolay A. Pchelintsev et al.

CELL REPORTS (2013)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Letter Biochemical Research Methods

ChromHMM: automating chromatin-state discovery and characterization

Jason Ernst et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst et al.

NATURE (2011)

Letter Biotechnology & Applied Microbiology

Integrative genomics viewer

James T. Robinson et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

Chaperoning Histones during DNA Replication and Repair

Monica Ransom et al.

Article Biochemistry & Molecular Biology

Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions

Aaron D. Goldberg et al.

Article Biochemistry & Molecular Biology

NuA4-dependent Acetylation of Nucleosomal Histones H4 and H2A Directly Stimulates Incorporation of H2A.Z by the SWR1 Complex

Mohammed Altaf et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2010)

Article Multidisciplinary Sciences

Generation and Characterization of the Anp32e-Deficient Mouse

Patrick T. Reilly et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T

Hiroaki Tachiwana et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biotechnology & Applied Microbiology

Capturing the dynamic epigenome

Roger B. Deal et al.

GENOME BIOLOGY (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

HJURP Is a Cell-Cycle-Dependent Maintenance and Deposition Factor of CENP-A at Centromeres

Elaine M. Dunleavy et al.

Article Cell Biology

Histone H2A.Z is essential for estrogen receptor signaling

Nicolas Gevry et al.

GENES & DEVELOPMENT (2009)

Article Biochemistry & Molecular Biology

Dynamic regulation of nucleosome positioning in the human genome

Dustin E. Schones et al.

Article Multidisciplinary Sciences

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

Daniel Zilberman et al.

NATURE (2008)

Article Biochemistry & Molecular Biology

Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitro

Hiroaki Tachiwana et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

The chromatin remodeling protein, SRCAP, is critical for deposition of the histone variant H2A.Z at promoters

Madeline M. Wong et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Article Cell Biology

Nucleosome stability mediated by histone variants H3.3 and H2A.Z

Chunyuan Jin et al.

GENES & DEVELOPMENT (2007)

Article Biochemistry & Molecular Biology

High-resolution profiling of histone methylations in the human genome

Artern Barski et al.

Article Cell Biology

Propagation of centromeric chromatin requires exit from mitosis

Lars E. T. Jansen et al.

JOURNAL OF CELL BIOLOGY (2007)

Article Multidisciplinary Sciences

H2A.Z contributes to the unique 3D structure of the centromere

Ian K. Greaves et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Monoubiquitylation of H2A.Z distinguishes its association with euchromatin or facultative heterochromatin

Elizabeth Sarcinella et al.

MOLECULAR AND CELLULAR BIOLOGY (2007)

Article Genetics & Heredity

Genome-scale profiling of histone H3.3 replacement patterns

Y Mito et al.

NATURE GENETICS (2005)

Article Cell Biology

Stress-induced transcription of satellite III repeats

C Jolly et al.

JOURNAL OF CELL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development

D Rangasamy et al.

EMBO JOURNAL (2003)

Article Cell Biology

The mechanism of inhibition of Ran-dependent nuclear transport by cellular ATP depletion

ED Schwoebel et al.

JOURNAL OF CELL BIOLOGY (2002)

Article Biochemistry & Molecular Biology

The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

K Ahmad et al.

MOLECULAR CELL (2002)

Article Biochemistry & Molecular Biology

HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis

D Ray-Gallet et al.

MOLECULAR CELL (2002)

Article Biochemistry & Molecular Biology

Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors

JK Tyler et al.

MOLECULAR AND CELLULAR BIOLOGY (2001)

Article Cell Biology

Dynamics of DNA replication factories in living cells

H Leonhardt et al.

JOURNAL OF CELL BIOLOGY (2000)

Review Biochemistry & Molecular Biology

A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage

JG Moggs et al.

MOLECULAR AND CELLULAR BIOLOGY (2000)