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Jonas Foerster et al.
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Daan H. de Groot et al.
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Joshua D. Rabinowitz et al.
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Christopher P. Long et al.
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Hong Zeng et al.
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Metabolic intermediate acetyl phosphate modulates bacterial virulence via acetylation
Jie Ren et al.
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Sheng Hui et al.
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Pierre Millard et al.
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Joachim von Wulffen et al.
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Mariola Szenk et al.
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Brice Enjalbert et al.
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Comprehensive characterization of toxicity of fermentative metabolites on microbial growth
Brandon Wilbanks et al.
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Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks
Pedro A. Saa et al.
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A simple method to control glycolytic flux for the design of an optimal cell factory
Jae Hyung Lim et al.
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Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli
Nusrat Jahan et al.
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Impact of kinetic isotope effects in isotopic studies of metabolic systems
Pierre Millard et al.
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Andre Wegner et al.
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Markus Basan et al.
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Vijayalakshmi Chelliah et al.
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Sampling of intracellular metabolites for stationary and non-stationary 13C metabolic flux analysis in Escherichia coli
Pierre Millard et al.
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Coordination of microbial metabolism
Victor Chubukov et al.
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Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates
Thomas Esquerre et al.
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Brian T. Weinert et al.
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Olga Revelles et al.
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Physiological and Molecular Timing of the Glucose to Acetate Transition in Escherichia coli
Brice Enjalbert et al.
METABOLITES (2013)
Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures
Sergio Renilla et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2012)
High-level dietary fibre up-regulates colonic fermentation and relative abundance of saccharolytic bacteria within the human faecal microbiota in vitro
Qing Shen et al.
EUROPEAN JOURNAL OF NUTRITION (2012)
New insights into Escherichia coli metabolism: carbon scavenging, acetate metabolism and carbon recycling responses during growth on glycerol
Karla Martinez-Gomez et al.
MICROBIAL CELL FACTORIES (2012)
Regulation and control of metabolic fluxes in microbes
Luca Gerosa et al.
CURRENT OPINION IN BIOTECHNOLOGY (2011)
Economics of membrane occupancy and respiro-fermentation
Kai Zhuang et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
α-ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
Christopher D. Doucette et al.
NATURE CHEMICAL BIOLOGY (2011)
Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase
Kaspar Valgepea et al.
BMC SYSTEMS BIOLOGY (2010)
Functional dissection of Escherichia coli phosphotransacetylase structural domains and analysis of key compounds involved in activity regulation
Valeria Alina Campos-Bermudez et al.
FEBS JOURNAL (2010)
The Physiological Stimulus for the BarA Sensor Kinase
Ricardo Gonzalez Chavez et al.
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Modeling and simulation of the main metabolism in Escherichia coli and its several single-gene knockout mutants with experimental verification
Tuty Asmawaty Abdul Kadir et al.
MICROBIAL CELL FACTORIES (2010)
Profiling human gut bacterial metabolism and its kinetics using [U-C-13]glucose and NMR
Albert A. de Graaf et al.
NMR IN BIOMEDICINE (2010)
The Systems Biology Graphical Notation
Nicolas Le Novere et al.
NATURE BIOTECHNOLOGY (2009)
Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine
Andrew J. Fabich et al.
INFECTION AND IMMUNITY (2008)
Metabolic control analysis: A tool for designing strategies to manipulate metabolic pathways
Rafael Moreno-Sanchez et al.
JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY (2008)
Ins and outs of glucose transport systems in eubacteria
Knut Jahreis et al.
FEMS MICROBIOLOGY REVIEWS (2008)
Respiration of Escherichia coli in the mouse intestine
Shari A. Jones et al.
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Response of the central metabolism of Escherichia coli to modified expression of glucose-6-phosphate the gene encoding the dehydrogenase
Cecile Nicolas et al.
FEBS LETTERS (2007)
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Stefan Hoops et al.
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Overflow metabolism in Escherichia coli during steady-state growth:: Transcriptional regulation and effect of the redox ratio
G. N. Vemuri et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Characterization of the acetate-producing pathways in Escherichia coli
CR Dittrich et al.
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Dynamic modeling of the central carbon metabolism of Escherichia coli
C Chassagnole et al.
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The glycolytic flux in Escherichia coli is controlled by the demand for ATP
BJ Koebmann et al.
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Co-consumption of sugars or ethanol and glucose in a Saccharomyces cerevisiae strain deleted in the HXK2 gene
LM Raamsdonk et al.
YEAST (2001)