相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The neuroinvasive potential of SARS-CoV2 may play a role in the respiratory failure of COVID-19 patients
Yan-Chao Li et al.
JOURNAL OF MEDICAL VIROLOGY (2020)
A new coronavirus associated with human respiratory disease in China
Fan Wu et al.
NATURE (2020)
A pneumonia outbreak associated with a new coronavirus of probable bat origin
Peng Zhou et al.
NATURE (2020)
Widespread non-modular overlapping codes in the coding regions*
Shaked Bergman et al.
PHYSICAL BIOLOGY (2020)
Dissimilation of synonymous codon usage bias in virus-host coevolution due to translational selection
Feng Chen et al.
NATURE ECOLOGY & EVOLUTION (2020)
Evidence of the COVID-19 Virus Targeting the CNS: Tissue Distribution, Host-Virus Interaction, and Proposed Neurotropic Mechanisms
Abdul Mannan Baig et al.
ACS CHEMICAL NEUROSCIENCE (2020)
Clinical Characteristics of COVID-19 Patients With Digestive Symptoms in Hubei, China: A Descriptive, Cross-Sectional, Multicenter Study
Lei Pan et al.
AMERICAN JOURNAL OF GASTROENTEROLOGY (2020)
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Carly G. K. Ziegler et al.
CELL (2020)
SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor
Markus Hoffmann et al.
CELL (2020)
Effect of Gastrointestinal Symptoms in Patients With COVID-19
Zili Zhou et al.
GASTROENTEROLOGY (2020)
Digestive system is a potential route of COVID-19: an analysis of single-cell coexpression pattern of key proteins in viral entry process
Hao Zhang et al.
GUT (2020)
Analysis of Virus and Host Proteomes During Productive HSV-1 and VZV Infection in Human Epithelial Cells
Werner J. D. Ouwendijk et al.
FRONTIERS IN MICROBIOLOGY (2020)
Neurologic Manifestations of Hospitalized Patients With Coronavirus Disease 2019 in Wuhan, China
Ling Mao et al.
JAMA NEUROLOGY (2020)
Translational efficiency across healthy and tumor tissues is proliferation-related
Xavier Hernandez-Alias et al.
MOLECULAR SYSTEMS BIOLOGY (2020)
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Waradon Sungnak et al.
NATURE MEDICINE (2020)
The fit of codon usage of human-isolated avian influenza A viruses to human
Wen Luo et al.
INFECTION GENETICS AND EVOLUTION (2020)
Global In-Silico Scenario of tRNA Genes and Their Organization in Virus Genomes
Sergio Morgado et al.
VIRUSES-BASEL (2019)
Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design
Aikaterini Alexaki et al.
JOURNAL OF MOLECULAR BIOLOGY (2019)
Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)
Peter J. Walker et al.
ARCHIVES OF VIROLOGY (2019)
N-Glycolylneuraminic Acid as a Receptor for Influenza A Viruses
Frederik Broszeit et al.
CELL REPORTS (2019)
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection
Monica Golumbeanu et al.
SCIENTIFIC REPORTS (2019)
Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions
Luis Nobre et al.
ELIFE (2019)
Deep RNA Sequencing Reveals a Repertoire of Human Fibroblast Circular RNAs Associated with Cellular Responses to Herpes Simplex Virus 1 Infection
Jiandong Shi et al.
CELLULAR PHYSIOLOGY AND BIOCHEMISTRY (2018)
Codon usage of highly expressed genes affects proteome-wide translation efficiency
Idan Frumkin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification
Pakorn Aiewsakun et al.
MICROBIOME (2018)
Accurate mapping of tRNA reads
Anne Hoffmann et al.
BIOINFORMATICS (2018)
Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers
Zhao Zhang et al.
COMMUNICATIONS BIOLOGY (2018)
Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
Nathan A. Ahlgren et al.
NUCLEIC ACIDS RESEARCH (2017)
Canine parvovirus type 2 (CPV-2) and Feline panleukopenia virus (FPV) codon bias analysis reveals a progressive adaptation to the new niche after the host jump
Giovanni Franzo et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)
Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP
Tasos Gogakos et al.
CELL REPORTS (2017)
Recombination, meiotic expression and human codon usage
Fanny Pouyet et al.
ELIFE (2017)
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation
Ceri A Fielding et al.
eLife (2017)
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
Jie Ren et al.
MICROBIOME (2017)
Significant differences in terms of codon usage bias between bacteriophage early and late genes: a comparative genomics analysis
Oriah Mioduser et al.
BMC GENOMICS (2017)
A new and updated resource for codon usage tables
John Athey et al.
BMC BIOINFORMATICS (2017)
Evidence of translation efficiency adaptation of the coding regions of the bacteriophage lambda
Eli Goz et al.
DNA RESEARCH (2017)
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2016)
A Dual Program for Translation Regulation in Cellular Proliferation and Differentiation
Hila Gingold et al.
CELL (2014)
Quantitative Temporal Viromics: An Approach to Investigate Host-Pathogen Interaction
Michael P. Weekes et al.
CELL (2014)
WB-index: A sum-of-squares based index for cluster validity
Qinpei Zhao et al.
DATA & KNOWLEDGE ENGINEERING (2014)
Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC
V. Stalin Raj et al.
NATURE (2013)
Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding
Sebastian Pechmann et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
Vaccinia and influenza A viruses select rather than adjust tRNAs to optimize translation
Mariana Pavon-Eternod et al.
NUCLEIC ACIDS RESEARCH (2013)
Causes and Implications of Codon Usage Bias in RNA Viruses
Ilya S. Belalov et al.
PLOS ONE (2013)
Next-Generation Sequencing of Small RNAs from HIV-Infected Cells Identifies Phased microRNA Expression Patterns and Candidate Novel microRNAs Differentially Expressed upon Infection
Stewart T. Chang et al.
MBIO (2013)
High-Resolution Profiling and Analysis of Viral and Host Small RNAs during Human Cytomegalovirus Infection
Thomas J. Stark et al.
JOURNAL OF VIROLOGY (2012)
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
Manqing Li et al.
NATURE (2012)
Isolation of a Novel Coronavirus from a Man with Pneumonia in Saudi Arabia
Ali Moh Zaki et al.
NEW ENGLAND JOURNAL OF MEDICINE (2012)
Dynamic changes in translational efficiency are deduced from codon usage of the transcriptome
Hila Gingold et al.
NUCLEIC ACIDS RESEARCH (2012)
ViennaRNA Package 2.0
Ronny Lorenz et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
HIV-1 Modulates the tRNA Pool to Improve Translation Efficiency
Anna van Weringh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Synonymous but not the same: the causes and consequences of codon bias
Joshua B. Plotkin et al.
NATURE REVIEWS GENETICS (2011)
ViralZone: a knowledge resource to understand virus diversity
Chantal Hulo et al.
NUCLEIC ACIDS RESEARCH (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus
Emily H. M. Wong et al.
BMC EVOLUTIONARY BIOLOGY (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
Rationalizing the development of live attenuated virus vaccines
Adam S. Lauring et al.
NATURE BIOTECHNOLOGY (2010)
Recode-2: new design, new search tools, and many more genes
Michael Bekaert et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
Steve Hoffmann et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Codon bias is a major factor explaining phage evolution in translationally biased hosts
Alessandra Carbone
JOURNAL OF MOLECULAR EVOLUTION (2008)
KnotInFrame: prediction of-1 ribosomal frameshift events
Corinna Theis et al.
NUCLEIC ACIDS RESEARCH (2008)
Genome Landscapes and Bacteriophage Codon Usage
Julius B. Lucks et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Evolutionary basis of codon usage and nucleotide composition bias in vertebrate DNA viruses
Laura A. Shackelton et al.
JOURNAL OF MOLECULAR EVOLUTION (2006)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Gene codon composition determines differentiation-dependent expression of a viral capsid gene in keratinocytes in vitro and in vivo
KN Zhao et al.
MOLECULAR AND CELLULAR BIOLOGY (2005)
Solving the riddle of codon usage preferences: a test for translational selection
M dos Reis et al.
NUCLEIC ACIDS RESEARCH (2004)
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome
M dos Reis et al.
NUCLEIC ACIDS RESEARCH (2003)
Identification of a novel coronavirus in patients with severe acute respiratory syndrome
C Drosten et al.
NEW ENGLAND JOURNAL OF MEDICINE (2003)
The extent of codon usage bias in human RNA viruses and its evolutionary origin
GM Jenkins et al.
VIRUS RESEARCH (2003)
分享论文
