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Gurdeep Singh et al.
IMMUNOLOGY (2019)
Microbiomes as sources of emergent host phenotypes
J. B. Lynch et al.
SCIENCE (2019)
Selective maternal seeding and environment shape the human gut microbiome
Katri Korpela et al.
GENOME RESEARCH (2018)
A global atlas of the dominant bacteria found in soil
Manuel Delgado-Baquerizo et al.
SCIENCE (2018)
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Jacquelynn Benjamino et al.
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Bacterial diversification through geological time
Stilianos Louca et al.
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Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal
Sean M. Kearney et al.
CELL REPORTS (2018)
Denoising the Denoisers: an independent evaluation of microbiome sequence error-correction approaches
Jacob T. Nearing et al.
PEERJ (2018)
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Alexandre Jousset et al.
ISME JOURNAL (2017)
Neonatal acquisition of Clostridia species protects against colonization by bacterial pathogens
Yun-Gi Kim et al.
SCIENCE (2017)
Inbred Mouse Populations Exhibit Intergenerational Changes in Intestinal Microbiota Composition and Function Following Introduction to a Facility
Jocelyn M. Choo et al.
FRONTIERS IN MICROBIOLOGY (2017)
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir et al.
MSYSTEMS (2017)
&ITSigTree&IT: A Microbial Community Analysis Tool to Identify and Visualize Significantly Responsive Branches in a Phylogenetic Tree
John R. Stevens et al.
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (2017)
Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence
Monika Schaubeck et al.
GUT (2016)
Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study
Toshitaka Odamaki et al.
BMC MICROBIOLOGY (2016)
Multicenter quality assessment of 16S ribosomal DNA-sequencing for microbiome analyses reveals high inter-center variability
Andreas Hiergeist et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2016)
Accounting for reciprocal host-microbiome interactions in experimental science
Thaddeus S. Stappenbeck et al.
NATURE (2016)
DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan et al.
NATURE METHODS (2016)
The fecal microbiota as a biomarker for disease activity in Crohn's disease
Danyta. I. Tedjo et al.
SCIENTIFIC REPORTS (2016)
The outer mucus layer hosts a distinct intestinal microbial niche
Hai Li et al.
NATURE COMMUNICATIONS (2015)
The composition of the gut microbiota shapes the colon mucus barrier
Hedvig E. Jakobsson et al.
EMBO REPORTS (2015)
Variation in Taxonomic Composition of the Fecal Microbiota in an Inbred Mouse Strain across Individuals and Time
Yana Emmy Hoy et al.
PLOS ONE (2015)
The colonic mucus protection depends on the microbiota
Ana M. Rodriguez-Pineiro et al.
GUT MICROBES (2015)
Meta-analyses of human gut microbes associated with obesity and IBD
William A. Walters et al.
FEBS LETTERS (2014)
Eosinophils Promote Generation and Maintenance of Immunoglobulin-A-Expressing Plasma Cells and Contribute to Gut Immune Homeostasis
Van Trung Chu et al.
IMMUNITY (2014)
Ribosomal Database Project: data and tools for high throughput rRNA analysis
James R. Cole et al.
NUCLEIC ACIDS RESEARCH (2014)
Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity
Ashley Shade et al.
MBIO (2014)
Microbial shifts in the aging mouse gut
Morgan Gi Langille et al.
MICROBIOME (2014)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?
Wouter G. Touw et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Stochastic changes over time and not founder effects drive cage effects in microbial community assembly in a mouse model
Jonathan McCafferty et al.
ISME JOURNAL (2013)
The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
Tomas Vetrovsky et al.
PLOS ONE (2013)
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
Sara C. Di Rienzi et al.
ELIFE (2013)
Cohabiting family members share microbiota with one another and with their dogs
Se Jin Song et al.
ELIFE (2013)
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
Falk Hildebrand et al.
GENOME BIOLOGY (2013)
The Transcription Factor T-bet Regulates Intestinal Inflammation Mediated by Interleukin-7 Receptor+ Innate Lymphoid Cells
Nick Powell et al.
IMMUNITY (2012)
Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii
M. Million et al.
INTERNATIONAL JOURNAL OF OBESITY (2012)
NIH Image to ImageJ: 25 years of image analysis
Caroline A. Schneider et al.
NATURE METHODS (2012)
Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer
Weiguang Chen et al.
PLOS ONE (2012)
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease
Eliseo Papa et al.
PLOS ONE (2012)
Inflammation Drives Dysbiosis and Bacterial Invasion in Murine Models of Ileal Crohn's Disease
Melanie Craven et al.
PLOS ONE (2012)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease
Alan W. Walker et al.
BMC MICROBIOLOGY (2011)
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
Murray P. Cox et al.
BMC BIOINFORMATICS (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Multidrug resistance gene deficient (mdr1a-/-) mice have an altered caecal microbiota that precedes the onset of intestinal inflammation
K. Nones et al.
JOURNAL OF APPLIED MICROBIOLOGY (2009)
Early differences in fecal microbiota composition in children may predict overweight
Marko Kalliomaki et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2008)
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
BMC BIOINFORMATICS (2008)
The ecodist package for dissimilarity-based analysis of ecological data
Sarah C. Goslee et al.
JOURNAL OF STATISTICAL SOFTWARE (2007)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach
C Manichanh et al.
GUT (2006)
Obesity alters gut microbial ecology
RE Ley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Diversity of the human intestinal microbial flora
PB Eckburg et al.
SCIENCE (2005)
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
SJ Ott et al.
GUT (2004)