相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters
Yan Yu et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Genomic Insights Into the Mycobacterium kansasii Complex: An Update
Tomasz Jagielski et al.
FRONTIERS IN MICROBIOLOGY (2020)
Large Extracellular Cord Formation in a Zebrafish Model of Mycobacterium kansasii Infection
Matt D. Johansen et al.
JOURNAL OF INFECTIOUS DISEASES (2020)
Comparative Genomic and Transcriptomic Analyses of Mycobacterium kansasii Subtypes Provide New Insights Into Their Pathogenicity and Taxonomy
Qingtian Guan et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2020)
The complexities and challenges of preventing and treating nontuberculous mycobacterial diseases
Susan L. Baldwin et al.
PLOS NEGLECTED TROPICAL DISEASES (2019)
Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
Florian Tagini et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2019)
Parallelization of MAFFT for large-scale multiple sequence alignments
Tsukasa Nakamura et al.
BIOINFORMATICS (2018)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Loving the poison: the methylcitrate cycle and bacterial pathogenesis
Stephen K. Dolan et al.
MICROBIOLOGY-SGM (2018)
Blending genomes: distributive conjugal transfer in mycobacteria, a sexier form of HGT
Todd A. Gray et al.
MOLECULAR MICROBIOLOGY (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Zinc depletion induces ribosome hibernation in mycobacteria
Yunlong Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Chirag Jain et al.
NATURE COMMUNICATIONS (2018)
Iron homeostasis in Mycobacterium tuberculosis is essential for persistence
Manitosh Pandey et al.
SCIENTIFIC REPORTS (2018)
Epidemiology of pulmonary disease due to nontuberculous mycobacteria in Southern China, 2013-2016
Yaoju Tan et al.
BMC PULMONARY MEDICINE (2018)
Global expansion of Mycobacterium tuberculosis lineage 4 shaped by colonial migration and local adaptation
Ola B. Brynildsrud et al.
SCIENCE ADVANCES (2018)
Phandango: an interactive viewer for bacterial population genomics
James Hadfield et al.
BIOINFORMATICS (2018)
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard et al.
VIRUS EVOLUTION (2018)
TreeTime: Maximum-likelihood phylodynamic analysis
Pavel Sagulenko et al.
VIRUS EVOLUTION (2018)
TIPDATINGBEAST: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
Adrien Rieux et al.
MOLECULAR ECOLOGY RESOURCES (2017)
Diversity of nontuberculous mycobacteria in eastern and southern China: a cross-sectional study
Yu Pang et al.
EUROPEAN RESPIRATORY JOURNAL (2017)
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations
Rafal Mostowy et al.
MOLECULAR BIOLOGY AND EVOLUTION (2017)
Lactate oxidation facilitates growth of Mycobacterium tuberculosis in human macrophages
Sandra Billig et al.
SCIENTIFIC REPORTS (2017)
Iron Homeostasis in Mycobacterium tuberculosis: Mechanistic Insights into Siderophore-Mediated Iron Uptake
Manjula Sritharan
JOURNAL OF BACTERIOLOGY (2016)
The prevalence of non-tuberculous mycobacterial infections in mainland China: Systematic review and meta-analysis
Xia Yu et al.
JOURNAL OF INFECTION (2016)
ESX secretion systems: mycobacterial evolution to counter host immunity
Matthias I. Groschel et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Within-host evolution of bacterial pathogens
Xavier Didelot et al.
NATURE REVIEWS MICROBIOLOGY (2016)
Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium
Josephine M. Bryant et al.
SCIENCE (2016)
Practical Approaches for Detecting Selection in Microbial Genomes
Jessica Hedge et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
Mycobacterium kansasii Subtype I Is Associated With Clarithromycin Resistance in China
Yanming Li et al.
FRONTIERS IN MICROBIOLOGY (2016)
pks5-recombination-mediated surface remodelling in Mycobacterium tuberculosis emergence
Eva C. Boritsch et al.
NATURE MICROBIOLOGY (2016)
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)
Andrew Rambaut et al.
VIRUS EVOLUTION (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
ClicO FS: an interactive web-based service of Circos
Wei-Hien Cheong et al.
BIOINFORMATICS (2015)
Insights on the Emergence of Mycobacterium tuberculosis from the Analysis of Mycobacterium kansasii
Joyce Wang et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Molecular characterisation of clinical and environmental isolates of Mycobacterium kansasii isolates from South African gold mines
Geoffrey Kwenda et al.
JOURNAL OF WATER AND HEALTH (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
MKAN27435 Is Required for the Biosynthesis of Higher Subclasses of Lipooligosaccharides in Mycobacterium kansasii
Vijayashankar Nataraj et al.
PLOS ONE (2015)
Take five - Type VII secretion systems of Mycobacteria
Edith N. G. Houben et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Human-to-human transmission of Mycobacterium kansasii or victims of a shared source?
William M. Ricketts et al.
EUROPEAN RESPIRATORY JOURNAL (2014)
Strain variation amongst clinical and potable water isolates of M. kansasii using automated repetitive unit PCR
Rachel Thomson et al.
INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY (2014)
The epidemiologic relationship between tuberculosis and non-tuberculous mycobacterial disease: a systematic review
S. K. Brode et al.
INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE (2014)
Increased Phagocytosis of Mycobacterium marinum Mutants Defective in Lipooligosaccharide Production A STRUCTURE-ACTIVITY RELATIONSHIP STUDY
Laeticia Alibaud et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
Bastian Pfeifer et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Increase in Nontuberculous Mycobacteria Isolated in Shanghai, China: Results from a Population-Based Study
Jie Wu et al.
PLOS ONE (2014)
Methylcitrate cycle defines the bactericidal essentiality of isocitrate lyase for survival of Mycobacterium tuberculosis on fatty acids
Hyungjin Eoh et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
The geographic diversity of nontuberculous mycobacteria isolated from pulmonary samples An NTM-NET collaborative study
Wouter Hoefsloot et al.
EUROPEAN RESPIRATORY JOURNAL (2013)
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
Lu Cheng et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus
Alexandre Pawlik et al.
MOLECULAR MICROBIOLOGY (2013)
The TetR Family of Regulators
Leslie Cuthbertson et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2013)
Cholesterol Catabolism by Mycobacterium tuberculosis Requires Transcriptional and Metabolic Adaptations
Jennifer E. Griffin et al.
CHEMISTRY & BIOLOGY (2012)
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt et al.
GENOME RESEARCH (2012)
Unexpected Link between Lipooligosaccharide Biosynthesis and Surface Protein Release in Mycobacterium marinum
Aniek D. van der Woude et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Zebrafish embryo screen for mycobacterial genes involved in the initiation of granuloma formation reveals a newly identified ESX-1 component
Esther J. M. Stoop et al.
DISEASE MODELS & MECHANISMS (2011)
Lipid hydrolizing enzymes in virulence: Mycobacterium tuberculosis as a model system
Gurdyal Singh et al.
CRITICAL REVIEWS IN MICROBIOLOGY (2010)
Direct Visualization by Cryo-EM of the Mycobacterial Capsular Layer: A Labile Structure Containing ESX-1-Secreted Proteins
Musa Sani et al.
PLOS PATHOGENS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Identification of the Polyketide Synthase Involved in the Biosynthesis of the Surface-Exposed Lipooligosaccharides in Mycobacteria
Gilles Etienne et al.
JOURNAL OF BACTERIOLOGY (2009)
Genomic analysis of zinc homeostasis in Mycobacterium tuberculosis
Giovanna Riccardi et al.
FEMS MICROBIOLOGY LETTERS (2008)
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
Kathryn E. Holt et al.
NATURE GENETICS (2008)
A phylogenomic analysis of the Actinomycetales mce operons
Nicola Casali et al.
BMC GENOMICS (2007)
Global analysis of the Mycobacterium tuberculosis Zur (FurB) regulon
Anna Maciag et al.
JOURNAL OF BACTERIOLOGY (2007)
Role of the methylcitrate cycle in Mycobacterium tuberculosis metabolism, intracellular growth, and virulence
Ernesto J. Muñoz-Elías et al.
MOLECULAR MICROBIOLOGY (2006)
Application of phylogenetic networks in evolutionary studies
DH Huson et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Mycobacteria in drinking water distribution systems: ecology and significance for human health
MJM Vaerewijck et al.
FEMS MICROBIOLOGY REVIEWS (2005)
Molecular analysis of Mycobacterium kansasii isolates from the United States
YS Zhang et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Clinical implications of Mycobacterium kansasii species heterogeneity:: Swiss national survey
C Taillard et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
Occurrence of mycobacteria in water treatment lines and in water distribution systems
C Le Dantec et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Management of disease due to Mycobacterium kansasii
DE Griffith
CLINICS IN CHEST MEDICINE (2002)
分享论文
