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Sevim Ozsoy et al.
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S. Khanna et al.
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M. J. T. Crobach et al.
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Clostridium difficile infection following systemic antibiotic administration in randomised controlled trials: a systematic review and meta-analysis
Konstantinos Z. Vardakas et al.
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Silan Gu et al.
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Anna Maria Seekatz et al.
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Ana M. Guzman Prieto et al.
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Wiep Klaas Smits et al.
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Lihua Zhang et al.
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Egija Zaura et al.
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Mohamed Mysara et al.
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Characterization of Romboutsia ilealis gen. nov., sp nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov and Asaccharospora gen. nov.
Jacoline Gerritsen et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
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Claudia Slimings et al.
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Multistate Point- Prevalence Survey of Health Care- Associated Infections
Shelley S. Magill et al.
NEW ENGLAND JOURNAL OF MEDICINE (2014)
Short-Term Effect of Antibiotics on Human Gut Microbiota
Suchita Panda et al.
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Alyxandria M. Schubert et al.
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Vijay C. Antharam et al.
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Robert C. Edgar
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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data
A. Murat Eren et al.
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Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection
Caroline Vincent et al.
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Anton Bankevich et al.
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Cesar A. Arias et al.
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Clostridium difficile infection: epidemiology, risk factors and management
Ashwin N. Ananthakrishnan
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Vivian G. Loo et al.
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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
Les Dethlefsen et al.
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Nicola Segata et al.
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The Changing Epidemiology of Clostridium difficile Infections
J. Freeman et al.
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Amee R. Manges et al.
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Long-term impacts of antibiotic exposure on the human intestinal microbiota
Cecilia Jernberg et al.
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Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
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Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
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Antimicrobial-associated risk factors for Clostridium difficile infection
Robert C. Owens et al.
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Les Dethlefsen et al.
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SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
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Long-term ecological impacts of antibiotic administration on the human intestinal microbiota
Cecilia Jernberg et al.
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J Pépin et al.
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Clostridium bartlettii sp nov., isolated from human faeces
YL Song et al.
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