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K. Bergstrom et al.
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Adam L. Haber et al.
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Liisa Arike et al.
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The Perseus computational platform for comprehensive analysis of (prote)omics data
Stefka Tyanova et al.
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Stefka Tyanova et al.
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2016 update of the PRIDE database and its related tools (vol 44, pg D447, 2016)
Juan Antonio Vizcaino et al.
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Joakim H. Bergstrom et al.
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George M. H. Birchenough et al.
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HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
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Hedvig E. Jakobsson et al.
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Nancy A. Erickson et al.
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F. Xiao et al.
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Malin E. V. Johansson et al.
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Michael I. Love et al.
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Ana M. Rodriguez-Pineiro et al.
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Anna Ermund et al.
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STAR: ultrafast universal RNA-seq aligner
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Juergen Cox et al.
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