4.8 Article

Myod1 and GR coordinate myofiber-specific transcriptional enhancers

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Skeletal muscle enhancer interactions identify genes controlling whole-body metabolism

Kristine Williams et al.

NATURE COMMUNICATIONS (2020)

Article Multidisciplinary Sciences

Integrative analysis of gene expression, DNA methylation, physiological traits, and genetic variation in human skeletal muscle

D. Leland Taylor et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

Dynamic enhancers control skeletal muscle identity and reprogramming

Krithika Ramachandran et al.

PLOS BIOLOGY (2019)

Article Biotechnology & Applied Microbiology

ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Yousra Ben Zouari et al.

GENOME BIOLOGY (2019)

Review Cell Biology

Maximizing Cellular Adaptation to Endurance Exercise in Skeletal Muscle

John A. Hawley et al.

CELL METABOLISM (2018)

Article Biochemistry & Molecular Biology

peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data

Geert Geeven et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development

Douglas H. Phanstiel et al.

MOLECULAR CELL (2017)

Article Cell Biology

Hepatic Dysfunction Caused by Consumption of a High-Fat Diet

Anthony R. Soltis et al.

CELL REPORTS (2017)

Article Endocrinology & Metabolism

Importance of the Sequence-Directed DNA Shape for Specific Binding Site Recognition by the Estrogen-Related Receptor

Kareem Mohideen-Abdul et al.

FRONTIERS IN ENDOCRINOLOGY (2017)

Article Biotechnology & Applied Microbiology

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

Ali Sharifi-Zarchi et al.

BMC GENOMICS (2017)

Editorial Material Biochemical Research Methods

Comments on: fold change rank ordering statistics: a new method for detecting differentially expressed genes

Doulaye Dembele et al.

BMC BIOINFORMATICS (2016)

Correction Genetics & Heredity

Organization and function of the 3D genome(vol 17, 661, 2016)

Boyan Bonev et al.

NATURE REVIEWS GENETICS (2016)

Article Biochemistry & Molecular Biology

Peak-valley-peak pattern of histone modifications delineates active regulatory elements and their directionality

Sachin Pundhir et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Cell Biology

Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue

Delphine Duteil et al.

CELL REPORTS (2016)

Article Biochemical Research Methods

InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams

Henry Heberle et al.

BMC BIOINFORMATICS (2015)

Article Multidisciplinary Sciences

The transcriptional coregulator PGC-1β controls mitochondrial function and anti-oxidant defence in skeletal muscles

Thanuja Gali Ramamoorthy et al.

NATURE COMMUNICATIONS (2015)

Article Genetics & Heredity

Runx1 Transcription Factor Is Required for Myoblasts Proliferation during Muscle Regeneration

Kfir Baruch Umansky et al.

PLOS GENETICS (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Fold change rank ordering statistics: a new method for detecting differentially expressed genes

Doulaye Dembele et al.

BMC BIOINFORMATICS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Review Biochemistry & Molecular Biology

Glucocorticoid-induced skeletal muscle atrophy

O. Schakman et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Allosteric Controls of Nuclear Receptor Function in the Regulation of Transcription

Isabelle Billas et al.

JOURNAL OF MOLECULAR BIOLOGY (2013)

Article Biochemistry & Molecular Biology

eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

Kambiz Mousavi et al.

MOLECULAR CELL (2013)

Article Biochemistry & Molecular Biology

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

Jing Wang et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Article Endocrinology & Metabolism

A cell-autonomous role for the glucocorticoid receptor in skeletal muscle atrophy induced by systemic glucocorticoid exposure

Monica L. Watson et al.

AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2012)

Article Cell Biology

Genetic and Epigenetic Determinants of Neurogenesis and Myogenesis

Abraham P. Fong et al.

DEVELOPMENTAL CELL (2012)

Article Multidisciplinary Sciences

A map of the cis-regulatory sequences in the mouse genome

Yin Shen et al.

NATURE (2012)

Article Biochemical Research Methods

Robust 4C-seq data analysis to screen for regulatory DNA interactions

Harmen J. G. van de Werken et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

NIH Image to ImageJ: 25 years of image analysis

Caroline A. Schneider et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Genome-wide analysis of glucocorticoid receptor-binding sites in myotubes identifies gene networks modulating insulin signaling

Taiyi Kuo et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Master Transcription Factors Determine Cell-Type-Specific Responses to TGF-β Signaling

Alan C. Mullen et al.

Article Biochemistry & Molecular Biology

seqMINER: an integrated ChIP-seq data interpretation platform

Tao Ye et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Multidisciplinary Sciences

Myocytic androgen receptor controls the strength but not the mass of limb muscles

Celine Chambon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Glucocorticoid Receptor Activation of the Ciz1-Lcn2 Locus by Long Range Interactions

Ofir Hakim et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2009)

Article Biochemistry & Molecular Biology

MEME SUITE: tools for motif discovery and searching

Timothy L. Bailey et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

DNA Binding Site Sequence Directs Glucocorticoid Receptor Structure and Activity

Sebastiaan H. Meijsing et al.

SCIENCE (2009)

Article Endocrinology & Metabolism

The glucocorticoid receptor and FOXO1 synergistically activate the skeletal muscle atrophy-associated MuRF1 gene

David S. Waddell et al.

AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM (2008)

Article Biotechnology & Applied Microbiology

Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang et al.

GENOME BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

Tae Hoon Kim et al.

Review Cell Biology

MyoD and the transcriptional control of myogenesis

CA Berkes et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2005)

Article Biochemical Research Methods

Open source clustering software

MJL de Hoon et al.

BIOINFORMATICS (2004)

Review Biotechnology & Applied Microbiology

Principles for modulation of the nuclear receptor superfamily

H Gronemeyer et al.

NATURE REVIEWS DRUG DISCOVERY (2004)

Article Biochemistry & Molecular Biology

Multiple types of skeletal muscle atrophy involve a common program of changes in gene expression

SH Lecker et al.

FASEB JOURNAL (2004)

Article Multidisciplinary Sciences

Identification of ubiquitin ligases required for skeletal muscle atrophy

SC Bodine et al.

SCIENCE (2001)