期刊
NATURE METHODS
卷 18, 期 5, 页码 472-+出版社
NATURE PORTFOLIO
DOI: 10.1038/s41592-021-01117-3
关键词
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资金
- National Science Foundation [1617369]
- Natural Sciences and Engineering Research Council of Canada [298328]
- Tianjin Municipal Science and Technology Commission [13ZCZDGX01099]
- National Natural Science Foundation of China [31970649, 11701296]
- Natural Science Foundation of Tianjin [18JCYBJC24900]
- Japan Agency for Medical Research and Development [16cm0106320h0001]
- Australian Research Council [DP180102060]
- Research Foundation Flanders [G.0328.16 N]
- Agence Nationale de la Recherche [ANR-14-CE10-0021, ANR-17-CE12-0016]
- ELTE Thematic Excellence Programme - Hungarian Ministry for Innovation and Technology [ED-18-1-2019-0030]
- 'Lendulet' grant from the Hungarian Academy of Sciences [LP2014-18]
- Hungarian Scientific Research Fund [K124670, K131702]
- European Union's Horizon 2020 research and innovation program under Marie Sklodowska-Curie grant [778247]
- Italian Ministry of University and Research (PRIN 2017) [2017483NH8]
- ELIXIR, the European infrastructure for biological data
- state task Bioinformatics and proteomics studies of proteins and their complexes [01152019-004]
- Agence Nationale de la Recherche (ANR) [ANR-17-CE12-0016] Funding Source: Agence Nationale de la Recherche (ANR)
Intrinsically disordered proteins present a challenge to traditional protein structure-function analysis, with computational methods, particularly deep learning techniques, showing superior performance in predicting disorder. However, predicting disordered binding regions remains difficult, and there is a significant variation in computational times among methods.
Intrinsically disordered proteins, defying the traditional protein structure-function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is high. The Critical Assessment of protein Intrinsic Disorder prediction (CAID) experiment was established as a community-based blind test to determine the state of the art in prediction of intrinsically disordered regions and the subset of residues involved in binding. A total of 43 methods were evaluated on a dataset of 646 proteins from DisProt. The best methods use deep learning techniques and notably outperform physicochemical methods. The top disorder predictor has F-max = 0.483 on the full dataset and F-max = 0.792 following filtering out of bona fide structured regions. Disordered binding regions remain hard to predict, with F-max = 0.231. Interestingly, computing times among methods can vary by up to four orders of magnitude.
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