相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Cytosolic sensor STING in mucosal immunity: a master regulator of gut inflammation and carcinogenesis
Qiongyuan Hu et al.
JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH (2021)
Dietary Diversification and Specialization in Neotropical Bats Facilitated by Early Molecular Evolution
Joshua H. T. Potter et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae
Michael Westbury et al.
MOLECULAR BIOLOGY AND EVOLUTION (2021)
Relaxed Selection and the Rapid Evolution of Reproductive Genes
Amy L. Dapper et al.
TRENDS IN GENETICS (2020)
Genome-wide analysis reveals the genomic features of the turkey vulture (Cathartes aura) as a scavenger
Chuang Zhou et al.
MOLECULAR GENETICS AND GENOMICS (2019)
RERconverge: an R package for associating evolutionary rates with convergent traits
Amanda Kowalczyk et al.
BIOINFORMATICS (2019)
FasParser2: a graphical platform for batch manipulation of tremendous amount of sequence data
Yan-Bo Sun
BIOINFORMATICS (2018)
Genetic diversity through time and space: diversity and demographic history from natural history specimens and serially sampled contemporary populations of the threatened Gouldian finch (Erythrura gouldiae)
Peri E. Bolton et al.
CONSERVATION GENETICS (2018)
Accurate Detection of Convergent Amino-Acid Evolution with PCOC
Carine Rey et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
The Role of the Polymeric Immunoglobulin Receptor and Secretory Immunoglobulins during Mucosal Infection and Immunity
Holly Turula et al.
VIRUSES-BASEL (2018)
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging
Marie Lisandra Zepeda Mendoza et al.
ACTA VETERINARIA SCANDINAVICA (2018)
Direct determination of diploid genome sequences
Neil I. Weisenfeld et al.
GENOME RESEARCH (2017)
How introns enhance gene expression
Orit Shaul
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2017)
A Systematic Review of Carrion Eaters' Adaptations to Avoid Sickness
Daniel T. Blumstein et al.
JOURNAL OF WILDLIFE DISEASES (2017)
The avian scavenger crisis: Looming extinctions, trophic cascades, and loss of critical ecosystem functions
Evan R. Buechley et al.
BIOLOGICAL CONSERVATION (2016)
Vultures
Evan R. Buechley et al.
CURRENT BIOLOGY (2016)
Prediction and estimation of effective population size
J. Wang et al.
HEREDITY (2016)
Phased diploid genome assembly with single-molecule real-time sequencing
Chen-Shan Chin et al.
NATURE METHODS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?
Zhengting Zou et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
CFTR, bicarbonate, and the pathophysiology of cystic fibrosis
Drucy Borowitz
PEDIATRIC PULMONOLOGY (2015)
The Evolution of Stomach Acidity and Its Relevance to the Human Microbiome
DeAnna E. Beasley et al.
PLOS ONE (2015)
The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures
Oksung Chung et al.
GENOME BIOLOGY (2015)
STING: infection, inflammation and cancer
Glen N. Barber
NATURE REVIEWS IMMUNOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
Andrew Adey et al.
GENOME RESEARCH (2014)
Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
Bruce J. Walker et al.
PLOS ONE (2014)
Comparative genomics reveals insights into avian genome evolution and adaptation
Guojie Zhang et al.
SCIENCE (2014)
The microbiome of New World vultures
Michael Roggenbuck et al.
NATURE COMMUNICATIONS (2014)
Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
Shengbin Li et al.
GENOME BIOLOGY (2014)
QUAST: quality assessment tool for genome assemblies
Alexey Gurevich et al.
BIOINFORMATICS (2013)
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations
Xuming Zhou et al.
NATURE COMMUNICATIONS (2013)
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
Mark J. Chaisson et al.
BMC BIOINFORMATICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
genBlastG: using BLAST searches to build homologous gene models
Rong She et al.
BIOINFORMATICS (2011)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
PHAST and RPHAST: phylogenetic analysis with space/time models
Melissa J. Hubisz et al.
BRIEFINGS IN BIOINFORMATICS (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Scavenging: how carnivores and carrion structure communities
Erin E. Wilson et al.
TRENDS IN ECOLOGY & EVOLUTION (2011)
Unexpected role of ungulate carcasses in the diet of Golden Eagles Aquila chrysaetos in Mediterranean mountains
Jose A. Sanchez-Zapata et al.
BIRD STUDY (2010)
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
Aaron McKenna et al.
GENOME RESEARCH (2010)
The Universal Protein Resource (UniProt) in 2010
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2010)
Structure and Biological Roles of Mucin-type O-glycans at the Ocular Surface
Ana Guzman-Aranguez et al.
OCULAR SURFACE (2010)
Toxicological Effects of Dietary Biogenic Amines
Victor Ladero et al.
CURRENT NUTRITION & FOOD SCIENCE (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Control of gastric acid secretion in health and disease
Mitchell L. Schubert et al.
GASTROENTEROLOGY (2008)
ALLPATHS: De novo assembly of whole-genome shotgun microreads
Jonathan Butler et al.
GENOME RESEARCH (2008)
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
Brian J. Haas et al.
GENOME BIOLOGY (2008)
Gel-forming mucins appeared early in metazoan evolution
Tiange Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya et al.
NUCLEIC ACIDS RESEARCH (2007)
Molecular cloning and characterisation of the griffon vulture (Gyps fulvus) toll-like receptor 1
Jose Manuel Perez de la Lastra et al.
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2007)
AUGUSTUS:: ab initio prediction of alternative transcripts
Mario Stanke et al.
NUCLEIC ACIDS RESEARCH (2006)
Why fruits rot, seeds mold and meat spoils: A reappraisal
TN Sherratt et al.
ECOLOGICAL MODELLING (2006)
TP53BP2 locus is associated with gastric cancer susceptibility
H Ju et al.
INTERNATIONAL JOURNAL OF CANCER (2005)
Polarized expression of CD74 by gastric epithelial cells
CA Barrera et al.
JOURNAL OF HISTOCHEMISTRY & CYTOCHEMISTRY (2005)
InterProScan: protein domains identifier
E Quevillon et al.
NUCLEIC ACIDS RESEARCH (2005)
Aligning multiple genomic sequences with the threaded blockset aligner
M Blanchette et al.
GENOME RESEARCH (2004)
Biological role of Ep-CAM in the physical interaction between epithelial cells and lymphocytes in intestinal epithelium
T Nochi et al.
CLINICAL IMMUNOLOGY (2004)
Gastric parietal cell acid secretion in mice can be regulated independently of H+/K+ ATPase endocytosis
NV Nguyen et al.
GASTROENTEROLOGY (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Detecting putative orthologs
DP Wall et al.
BIOINFORMATICS (2003)
Toll-like receptor (TLR) 2 and TLR5, but not TLR4, are required for Helicobacter pylori-induced NF-κB activation and chemokine expression by epithelial cells
MF Smith et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
Scavenging by vertebrates: behavioral, ecological, and evolutionary perspectives on an important energy transfer pathway in terrestrial ecosystems
TL DeVault et al.
OIKOS (2003)
Identification of a basolateral Cl-/HCO3- exchanger specific to gastric parietal cells
S Petrovic et al.
AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY (2003)
The cardiac K+ channel KCNQ1 is essential for gastric acid secretion
F Grahammer et al.
GASTROENTEROLOGY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)