4.8 Article

Elephant Genomes Reveal Accelerated Evolution in Mechanisms Underlying Disease Defenses

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The Evolution of Human Cancer Gene Duplications across Mammals

Marc Tollis et al.

MOLECULAR BIOLOGY AND EVOLUTION (2020)

Article Evolutionary Biology

Lifetime cancer prevalence and life history traits in mammals

Amy M. Boddy et al.

EVOLUTION MEDICINE AND PUBLIC HEALTH (2020)

Article Multidisciplinary Sciences

Elephants have a nose for quantity

Joshua M. Plotnik et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Multidisciplinary Sciences

A comprehensive genomic history of extinct and living elephants

Eleftheria Palkopoulou et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Evolutionary Biology

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

Andrew Rambaut et al.

SYSTEMATIC BIOLOGY (2018)

Review Biotechnology & Applied Microbiology

Conservation of biodiversity in the genomics era

Megan A. Supple et al.

GENOME BIOLOGY (2018)

Review Biochemistry & Molecular Biology

An emerging role for neutrophil extracellular traps in noninfectious disease

Selina K. Jorch et al.

NATURE MEDICINE (2017)

Article Biochemical Research Methods

BCFtools/csq: haplotype-aware variant consequences

Petr Danecek et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor

Nathan C. Sheffield et al.

BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Chromosome-scale shotgun assembly using an in vitro method for long-range linkage

Nicholas H. Putnam et al.

GENOME RESEARCH (2016)

Article Genetics & Heredity

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus

Betty M. Booker et al.

PLOS GENETICS (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

Enhancer Evolution across 20 Mammalian Species

Diego Villar et al.

Article Biochemistry & Molecular Biology

Complete Genomes Reveal Signatures of Demographic and Genetic Declines in the Woolly Mammoth

Eleftheria Palkopoulou et al.

CURRENT BIOLOGY (2015)

Article Medicine, General & Internal

Potential Mechanisms for Cancer Resistance in Elephants and Comparative Cellular Response to DNA Damage in Humans

Lisa M. Abegglen et al.

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2015)

Article Biochemistry & Molecular Biology

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

Itamar Sela et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biology

Solutions to Peto's paradox revealed by mathematical modelling and cross-species cancer gene analysis

Aleah F. Caulin et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2015)

Article Agriculture, Dairy & Animal Science

Elephant Natural History: A Genomic Perspective

Alfred L. Roca et al.

ANNUAL REVIEW OF ANIMAL BIOSCIENCES, VOL 3 (2015)

Review Veterinary Sciences

Review of Elephant Endotheliotropic Herpesviruses and Acute Hemorrhagic Disease

Simon Y. Long et al.

ILAR JOURNAL (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

Bastian Pfeifer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemical Research Methods

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

Remco Bouckaert et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

Pavlos Pavlidis et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Kazutaka Katoh et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Zoology

Genetic diversity in North American captive Asian elephants

R. Lei et al.

JOURNAL OF ZOOLOGY (2012)

Editorial Material Veterinary Sciences

Conservation: clarifying the risk from herpesvirus to captive Asian elephants

Gary S. Hayward

VETERINARY RECORD (2012)

Article Public, Environmental & Occupational Health

Prevalence, symptoms and management of uterine fibroids: an international internet-based survey of 21,746 women

Anne Zimmermann et al.

BMC WOMENS HEALTH (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt et al.

BMC BIOINFORMATICS (2011)

Article Biochemical Research Methods

PHAST and RPHAST: phylogenetic analysis with space/time models

Melissa J. Hubisz et al.

BRIEFINGS IN BIOINFORMATICS (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Multidisciplinary Sciences

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

Sante Gnerre et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Biochemistry & Molecular Biology

Sphingosine kinase: Role in regulation of bioactive sphingolipid mediators in inflammation

Ashley J. Snider et al.

BIOCHIMIE (2010)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Detection of nonneutral substitution rates on mammalian phylogenies

Katherine S. Pollard et al.

GENOME RESEARCH (2010)

Article Biotechnology & Applied Microbiology

GREAT improves functional interpretation of cis-regulatory regions

Cory Y. McLean et al.

NATURE BIOTECHNOLOGY (2010)

Review Genetics & Heredity

How the Fanconi Anemia Pathway Guards the Genome

George-Lucian Moldovan et al.

ANNUAL REVIEW OF GENETICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

Iain MacCallum et al.

GENOME BIOLOGY (2009)

Review Oncology

Tumour necrosis factor and cancer

Frances Balkwill

NATURE REVIEWS CANCER (2009)

Article Biochemical Research Methods

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

Mario Stanke et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Epidermal growth factor-like domain repeat of stabilin-2 recognizes phosphatidylserine during cell corpse clearance

Seung-Yoon Park et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

An optimized procedure greatly improves EST vector contamination removal

Yi-An Chen et al.

BMC GENOMICS (2007)

Review Genetics & Heredity

Gene conversion: mechanisms, evolution and human disease

Jian-Min Chen et al.

NATURE REVIEWS GENETICS (2007)

Article Biochemistry & Molecular Biology

Genomic scans for selective sweeps using SNP data

R Nielsen et al.

GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel et al.

GENOME RESEARCH (2005)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Biochemical Research Methods

Gene finding in novel genomes

I Korf

BMC BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes

WJ Kent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Statistics & Probability

The positive false discovery rate: A Bayesian interpretation and the q-value

JD Storey

ANNALS OF STATISTICS (2003)

Article Biochemistry & Molecular Biology

The human genome browser at UCSC

WJ Kent et al.

GENOME RESEARCH (2002)

Article Biochemistry & Molecular Biology

BLAT - The BLAST-like alignment tool

WJ Kent

GENOME RESEARCH (2002)