4.7 Article

Predicting future cognitive decline with hyperbolic stochastic coding

期刊

MEDICAL IMAGE ANALYSIS
卷 70, 期 -, 页码 -

出版社

ELSEVIER
DOI: 10.1016/j.media.2021.102009

关键词

Alzheimer's disease (AD); Hyperbolic space; Ring-shaped patches; Sparse coding; Classification

资金

  1. National Institutes of Health [RF1AG051710, R21AG065942, R01EB025032, U54EB020403, R01AG031581, P30AG19610]
  2. National Science Foundation [IIS1421165]
  3. Arizona Alzheimer's Consortium
  4. DOD ADNI (Department of Defense) [W81XWH-12-2-0012]
  5. National Institute on Aging
  6. National Institute of Biomedical Imaging and Bioengineering
  7. Alzheimer's Disease Neuroimaging Initiative (ADNI) (National Institutes of Health ) [U01 AG024904]
  8. AbbVie
  9. Alzheimers Association
  10. Alzheimers Drug Discovery Foundation
  11. Araclon Biotech
  12. BioClinica, Inc.
  13. Biogen
  14. Bristol-Myers Squibb Company
  15. CereSpir, Inc.
  16. Cogstate
  17. Eisai Inc.
  18. Elan Pharmaceuticals, Inc.
  19. Eli Lilly and Company
  20. EuroImmun
  21. F. Hoffmann-La Roche Ltd and its affiliated company Genentech, Inc.
  22. Fujirebio
  23. GE Healthcare
  24. IXICO Ltd.
  25. Janssen Alzheimer Immunotherapy Research AMP
  26. Development, LLC.
  27. Johnson AMP
  28. Johnson harmaceutical Research AMP
  29. Development LLC.
  30. Lumosity
  31. Lundbeck
  32. Merck Co., Inc.
  33. Meso Scale Diagnostics, LLC.
  34. NeuroRx Research
  35. Neurotrack Technologies
  36. Novartis Pharmaceuticals Corporation
  37. Pfizer Inc.
  38. Piramal Imaging
  39. Servier
  40. Takeda Pharmaceutical Company
  41. Transition Therapeutics
  42. Canadian Institutes of Health Research

向作者/读者索取更多资源

Hyperbolic geometry is applied in brain cortical and subcortical surfaces modeling, with a novel framework called hyperbolic stochastic coding (HSC) proposed for feature dimension reduction. By introducing feature extraction and max-pool algorithms in hyperbolic parameter space, the method shows superior classification accuracy in Alzheimer's disease progression studies.
Hyperbolic geometry has been successfully applied in modeling brain cortical and subcortical surfaces with general topological structures. However, such approaches, similar to other surface-based brain morphology analysis methods, usually generate high dimensional features. It limits their statistical power in cognitive decline prediction research, especially in datasets with limited subject numbers. To address the above limitation, we propose a novel framework termed as hyperbolic stochastic coding (HSC). We first compute diffeomorphic maps between general topological surfaces by mapping them to a canonical hyperbolic parameter space with consistent boundary conditions and extracts critical shape features. Secondly, in the hyperbolic parameter space, we introduce a farthest point sampling with breadth-first search method to obtain ring-shaped patches. Thirdly, stochastic coordinate coding and max-pooling algorithms are adopted for feature dimension reduction. We further validate the proposed system by comparing its classification accuracy with some other methods on two brain imaging datasets for Alzheimer's disease (AD) progression studies. Our preliminary experimental results show that our algorithm achieves superior results on various classification tasks. Our work may enrich surface-based brain imaging research tools and potentially result in a diagnostic and prognostic indicator to be useful in individualized treatment strategies. (c) 2021 Elsevier B.V. All rights reserved.

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