相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Long-term instability of the intestinal microbiome is associated with metabolic liver disease, low microbiota diversity, diabetes mellitus and impaired exocrine pancreatic function
Fabian Frost et al.
GUT (2021)
Statin therapy is associated with lower prevalence of gut microbiota dysbiosis
Sara Vieira-Silva et al.
NATURE (2020)
Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity
Lianmin Chen et al.
NATURE COMMUNICATIONS (2020)
Genetic and Microbial Associations to Plasma and Fecal Bile Acids in Obesity Relate to Plasma Lipids and Liver Fat Content
Lianmin Chen et al.
CELL REPORTS (2020)
Scaling read aligners to hundreds of threads on general-purpose processors
Ben Langmead et al.
BIOINFORMATICS (2019)
Prevalence of antimicrobial resistance genes in Bacteroides spp. and Prevotella spp. Dutch clinical isolates
A. C. M. Veloo et al.
CLINICAL MICROBIOLOGY AND INFECTION (2019)
Structural variation in the gut microbiome associates with host health
David Zeevi et al.
NATURE (2019)
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
Nandita R. Garud et al.
PLOS BIOLOGY (2019)
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
Jason Lloyd-Price et al.
NATURE (2019)
Longitudinal multi-omics of host-microbe dynamics in prediabetes
Wenyu Zhou et al.
NATURE (2019)
Gut microbiome-derived phenyl sulfate contributes to albuminuria in diabetic kidney disease
Koichi Kikuchi et al.
NATURE COMMUNICATIONS (2019)
VFDB 2019: a comparative pathogenomic platform with an interactive web interface
Bo Liu et al.
NUCLEIC ACIDS RESEARCH (2019)
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
Tommi Vatanen et al.
NATURE MICROBIOLOGY (2019)
The MetaCyc database of metabolic pathways and enzymes
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2018)
HMDB 4.0: the human metabolome database for 2018
David S. Wishart et al.
NUCLEIC ACIDS RESEARCH (2018)
Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life
Moran Yassour et al.
CELL HOST & MICROBE (2018)
Association between hippuric acid and left ventricular hypertrophy in maintenance hemodialysis patients
Teng-Hung Yu et al.
CLINICA CHIMICA ACTA (2018)
A system biology perspective on environment-host-microbe interactions
Lianmin Chen et al.
HUMAN MOLECULAR GENETICS (2018)
The importance of cohort studies in the post-GWAS era
Cisca Wijmenga et al.
NATURE GENETICS (2018)
Gut microbiota derived metabolites in cardiovascular health and disease
Zeneng Wang et al.
PROTEIN & CELL (2018)
Stability of the human faecal microbiome in a cohort of adult men
Raaj S. Mehta et al.
NATURE MICROBIOLOGY (2018)
Environment dominates over host genetics in shaping human gut microbiota
Daphna Rothschild et al.
NATURE (2018)
The human gut microbiome in early-onset type 1 diabetes from the TEDDY study
Tommi Vatanen et al.
NATURE (2018)
Temporal development of the gut microbiome in early childhood from the TEDDY study
Christopher J. Stewart et al.
NATURE (2018)
Species-level functional profiling of metagenomes and metatranscriptomes
Eric A. Franzosa et al.
NATURE METHODS (2018)
Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome
Arnau Vich Vila et al.
SCIENCE TRANSLATIONAL MEDICINE (2018)
Antibiotic resistance: a rundown of a global crisis
Bilal Aslam et al.
INFECTION AND DRUG RESISTANCE (2018)
Microbial strain-level population structure and genetic diversity from metagenomes
Duy Tin Truong et al.
GENOME RESEARCH (2017)
Faecalibacterium prausnitzii treatment improves hepatic health and reduces adipose tissue inflammation in high-fat fed mice
Eveliina Munukka et al.
ISME JOURNAL (2017)
Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price et al.
NATURE (2017)
A summary index for antimicrobial resistance in food animals in the Netherlands
Arie H. Havelaar et al.
BMC VETERINARY RESEARCH (2017)
Real friends: Faecalibacterium prausnitzii supports mucosal immune homeostasis
Mathias W. Hornef et al.
GUT (2016)
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
Ron Caspi et al.
NUCLEIC ACIDS RESEARCH (2016)
Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity
Alexandra Zhernakova et al.
SCIENCE (2016)
Population-level analysis of gut microbiome variation
Gwen Falony et al.
SCIENCE (2016)
Metabolomics-identified metabolites associated with body mass index and prospective weight gain among Mexican American women
H. Zhao et al.
OBESITY SCIENCE & PRACTICE (2016)
Extensive Strain-Level Copy-Number Variation across Human Gut Microbiome Species
Sharon Greenblum et al.
CELL (2015)
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Duy Tin Truong et al.
NATURE METHODS (2015)
Identifying personal microbiomes using metagenomic codes
Eric A. Franzosa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
The ecology of the microbiome: Networks, competition, and stability
Katharine Z. Coyte et al.
SCIENCE (2015)
Cohort profile: LifeLines DEEP, a prospective, general population cohort study in the northern Netherlands: study design and baseline characteristics
Ettje F. Tigchelaar et al.
BMJ OPEN (2015)
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
James Kaminski et al.
PLOS COMPUTATIONAL BIOLOGY (2015)
Cohort Profile: LifeLines, a three-generation cohort study and biobank
Salome Scholtens et al.
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2015)
UniProt: a hub for protein information
Alex Bateman et al.
NUCLEIC ACIDS RESEARCH (2015)
The impact of thiamine supplementation on blood pressure, serum lipids and C-reactive protein in individuals with hyperglycemia: a randomised, double-blind cross-over trial
F. Alaei-Shahmiri et al.
DIABETES & METABOLIC SYNDROME-CLINICAL RESEARCH & REVIEWS (2015)
Probiotic Bifidobacterium species: potential beneficial effects in diarrheal disorders. Focus on Probiotic Bifidobacterium species stimulate human SLC26A3 gene function and expression in intestinal epithelial cells
Debolina Ray et al.
AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY (2014)
Faecalibacterium prausnitzii and human intestinal health
S. Miquel et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Genomic variation landscape of the human gut microbiome
Siegfried Schloissnig et al.
NATURE (2013)
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
Amandine Everard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The Long-Term Stability of the Human Gut Microbiota
Jeremiah J. Faith et al.
SCIENCE (2013)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Normal and Pathologic Concentrations of Uremic Toxins
Flore Duranton et al.
JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY (2012)
Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp nov.
Ajay Kumar Mishra et al.
STANDARDS IN GENOMIC SCIENCES (2012)
High-Throughput, Accurate Mass Metabolome Profiling of Cellular Extracts by Flow Injection - Time-of-Flight Mass Spectrometry
Tobias Fuhrer et al.
ANALYTICAL CHEMISTRY (2011)
Bacterial transport of sulfate, molybdate, and related oxyanions
Esther Aguilar-Barajas et al.
BIOMETALS (2011)
pROC: an open-source package for R and S plus to analyze and compare ROC curves
Xavier Robin et al.
BMC BIOINFORMATICS (2011)
Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives
Marie Joossens et al.
GUT (2011)
Effects of Melatonin and Pycnogenol on Small Artery Structure and Function in Spontaneously Hypertensive Rats
Rita Rezzani et al.
HYPERTENSION (2010)
Erythropoietic Response and Outcomes in Kidney Disease and Type 2 Diabetes.
Scott D. Solomon et al.
NEW ENGLAND JOURNAL OF MEDICINE (2010)
Anti-inflammatory actions of melatonin and its metabolites, N1-acetyl-N2-formyl-5-methoxykynuramine (AFMK) and n1-acetyl-5-methoxykynuramine (AMK), in macrophages
JC Mayo et al.
JOURNAL OF NEUROIMMUNOLOGY (2005)
Oxidation of melatonin and its catabolites, N1-acetyl-N 2-formyl-5-methoxykynuramine and N1-acetyl-5-methoxykynuramine, by activated leukocytes
SO Silva et al.
JOURNAL OF PINEAL RESEARCH (2004)
Controlling the false discovery rate in behavior genetics research
Y Benjamini et al.
BEHAVIOURAL BRAIN RESEARCH (2001)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)