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注意:仅列出部分参考文献,下载原文获取全部文献信息。Emergence of SARS-CoV-2 B.1.1.7 Lineage — United States, December 29, 2020–January 12, 2021
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Nextstrain: real-time tracking of pathogen evolution
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Marc A. Suchard et al.
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Heng Li et al.
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