4.7 Article

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats

Irina Balaur et al.

BIOINFORMATICS (2020)

Article Mathematical & Computational Biology

Systems biology graphical notation markup language (SBGNML) version 0.3

Frank T. Bergmann et al.

JOURNAL OF INTEGRATIVE BIOINFORMATICS (2020)

Article Biochemical Research Methods

sbgntikz-a TikZ library to draw SBGN maps

Adrien Rougny

BIOINFORMATICS (2019)

Article Biochemical Research Methods

Model annotation and discovery with the Physiome Model Repository

Dewan M. Sarwar et al.

BMC BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

The Gene Ontology Resource: 20 years and still GOing strong

S. Carbon et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Mathematical & Computational Biology

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

Adrien Rougny et al.

JOURNAL OF INTEGRATIVE BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

The Reactome Pathway Knowledgebase

Antonio Fabregat et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Mathematical & Computational Biology

Identifying frequent patterns in biochemical reaction networks: a workflow

Fabienne Lambusch et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2018)

Article Computer Science, Artificial Intelligence

Owlready: Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies

Jean-Baptiste Lamy

ARTIFICIAL INTELLIGENCE IN MEDICINE (2017)

Article Biochemical Research Methods

STON: exploring biological pathways using the SBGN standard and graph databases

Vasundra Toure et al.

BMC BIOINFORMATICS (2016)

Article Mathematical & Computational Biology

Combining computational models, semantic annotations and simulation experiments in a graph database

Ron Henkel et al.

Database-The Journal of Biological Databases and Curation (2015)

Article Biochemistry & Molecular Biology

BioModels: ten-year anniversary

Vijayalakshmi Chelliah et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Mathematical & Computational Biology

Translation of SBGN maps: Process Description to Activity Flow

Torsten Vogt et al.

BMC SYSTEMS BIOLOGY (2013)

Letter Biotechnology & Applied Microbiology

Wiring diagrams in biology: towards the standardized representation of biological information

Astrid Junker et al.

TRENDS IN BIOTECHNOLOGY (2012)

Article Biochemistry & Molecular Biology

Controlled vocabularies and semantics in systems biology

Melanie Courtot et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemical Research Methods

Editing, validating and translating of SBGN maps

Tobias Czauderna et al.

BIOINFORMATICS (2010)

Article Biotechnology & Applied Microbiology

The BioPAX community standard for pathway data sharing

Emek Demir et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

Huaiyu Mi et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biotechnology & Applied Microbiology

The Systems Biology Graphical Notation

Nicolas Le Novere et al.

NATURE BIOTECHNOLOGY (2009)

Article Engineering, Electrical & Electronic

CellDesigner 3.5: A versatile modeling tool for biochemical networks

Akira Funahashi et al.

PROCEEDINGS OF THE IEEE (2008)

Article Biotechnology & Applied Microbiology

Using process diagrams for the graphical representation of biological networks

H Kitano et al.

NATURE BIOTECHNOLOGY (2005)

Article Biochemistry & Molecular Biology

PANTHER: A library of protein families and subfamilies indexed by function

PD Thomas et al.

GENOME RESEARCH (2003)