4.6 Article

JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Statistics & Probability

The shape of partial correlation matrices

Richard Artner et al.

Summary: This paper investigates mathematical descriptions of correlation structures. By deriving the necessary and sufficient conditions for the eigenvalues of partial correlation matrices, it highlights the complexity of generating correlation structures algorithmically. The paper also examines the space of valid partial correlation structures and compares it with the space of valid Pearson correlation structures, while deriving simple conditions for frequently assumed sparse structures.

COMMUNICATIONS IN STATISTICS-THEORY AND METHODS (2022)

Article Biochemical Research Methods

MODE-TASK: large-scale protein motion tools

Caroline Ross et al.

BIOINFORMATICS (2018)

Review Neurosciences

Molecular Dynamics Simulation for All

Scott A. Hollingsworth et al.

NEURON (2018)

Article Chemistry, Multidisciplinary

Decomposing Dynamical Couplings in Mutated scFv Antibody Fragments into Stabilizing and Destabilizing Effects

Azhagiya Singam Ettayapuram Ramaprasad et al.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2017)

Article Biochemical Research Methods

JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories

Charles C. David et al.

BMC BIOINFORMATICS (2017)

Article Chemistry, Physical

Contact- and distance-based principal component analysis of protein dynamics

Matthias Ernst et al.

JOURNAL OF CHEMICAL PHYSICS (2015)

Article Education, Scientific Disciplines

Suppressor Variables: The Difference between 'Is' versus 'Acting As'

Larry Ludlow et al.

JOURNAL OF STATISTICS EDUCATION (2014)

Article Chemistry, Physical

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

Daniel R. Roe et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Psychology, Social

Detecting outliers: Do not use standard deviation around the mean, use absolute deviation around the median

Christophe Leys et al.

JOURNAL OF EXPERIMENTAL SOCIAL PSYCHOLOGY (2013)

Article Biochemical Research Methods

Characterizing protein motions from structure

Charles C. David et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2011)

Article Multidisciplinary Sciences

Similarity Measures for Protein Ensembles

Kresten Lindorff-Larsen et al.

PLOS ONE (2009)

Article Biochemical Research Methods

Bio3d: an R package for the comparative analysis of protein structures

Barry J. Grant et al.

BIOINFORMATICS (2006)

Review Chemistry, Multidisciplinary

The Amber biomolecular simulation programs

DA Case et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)