相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Allosteric drugs and mutations: chances, challenges, and necessity
Enrico Guarnera et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2020)
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
Yan Zhang et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2020)
Allostery in Its Many Disguises: From Theory to Applications
Shoshana J. Wodak et al.
STRUCTURE (2019)
Controlling Allosteric Networks in Proteins
Nikolay V. Dokholyan
CHEMICAL REVIEWS (2016)
Allosteric sites: remote control in regulation of protein activity
Enrico Guarnera et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)
Computational approaches to investigating allostery
Ora Schueler-Furman et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2016)
Rigid-body motions of interacting proteins dominate multispecific binding of ubiquitin in a shape-dependent manner
Bhaskar Dasgupta et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2014)
A Unified View of How Allostery Works
Chung-Jung Tsai et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Optimization of an Elastic Network Augmented Coarse Grained Model to Study CCMV Capsid Deformation
Christoph Globisch et al.
PLOS ONE (2013)
A mass weighted chemical elastic network model elucidates closed form domain motions in proteins
Min Hyeok Kim et al.
PROTEIN SCIENCE (2013)
Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
Sarel J. Fleishman et al.
CELL (2012)
Elastic network normal modes provide a basis for protein structure refinement
Pawel Gniewek et al.
JOURNAL OF CHEMICAL PHYSICS (2012)
Combining Statistical Potentials with Dynamics-Based Entropies Improves Selection from Protein Decoys and Docking Poses
Michael T. Zimmermann et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2012)
Cross-neutralization of influenza A viruses mediated by a single antibody loop
Damian C. Ekiert et al.
NATURE (2012)
Dissipative electro-elastic network model of protein electrostatics
Daniel R. Martin et al.
PHYSICAL BIOLOGY (2012)
Complex Intramolecular Mechanics of G-actin - An Elastic Network Study
Markus Duettmann et al.
PLOS ONE (2012)
Highly Conserved Protective Epitopes on Influenza B Viruses
Cyrille Dreyfus et al.
SCIENCE (2012)
STRUCTURE FLUCTUATIONS AND CONFORMATIONAL CHANGES IN PROTEIN BINDING
Anatoly M. Ruvinsky et al.
JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (2012)
ProDy: Protein Dynamics Inferred from Theory and Experiments
Ahmet Bakan et al.
BIOINFORMATICS (2011)
Accurate Flexible Fitting of High-Resolution Protein Structures into Cryo-Electron Microscopy Maps Using Coarse-Grained Pseudo-Energy Minimization
Wenjun Zheng
BIOPHYSICAL JOURNAL (2011)
MAVENs: Motion analysis and visualization of elastic networks and structural ensembles
Michael T. Zimmermann et al.
BMC BIOINFORMATICS (2011)
ATP Binding Enables Broad Antibiotic Selectivity of Aminoglycoside Phosphotransferase(3′)-IIIa: An Elastic Network Analysis
Silke A. Wieninger et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
Structural Characterization of an Early Fusion Intermediate of Influenza Virus Hemagglutinin
Rui Xu et al.
JOURNAL OF VIROLOGY (2011)
Determination of Viral Capsid Elastic Properties from Equilibrium Thermal Fluctuations
Eric R. May et al.
PHYSICAL REVIEW LETTERS (2011)
Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin
Sarel J. Fleishman et al.
SCIENCE (2011)
A Multidomain Flexible Docking Approach to Deal with Large Conformational Changes in the Modeling of Biomolecular Complexes
Ezgi Karaca et al.
STRUCTURE (2011)
The Dynamical Mechanism of Auto-Inhibition of AMP-Activated Protein Kinase
Cheng Peng et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Decrypting the Sequence of Structural Events during the Gating Transition of Pentameric Ligand-Gated Ion Channels Based on an Interpolated Elastic Network Model
Wenjun Zheng et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases
A. Uyar et al.
PHYSICAL BIOLOGY (2011)
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
Yaping Feng et al.
BMC BIOINFORMATICS (2010)
Pore opening and closing of a pentameric ligand-gated ion channel
Fangqiang Zhu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Protein elastic network models and the ranges of cooperativity
Lei Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Antibody Recognition of a Highly Conserved Influenza Virus Epitope
Damian C. Ekiert et al.
SCIENCE (2009)
Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes
Lei Yang et al.
STRUCTURE (2008)
How well can we understand large-scale protein motions using normal modes of elastic network models?
Lei Yang et al.
BIOPHYSICAL JOURNAL (2007)
Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys
Yaping Feng et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
The extent of cooperativity of protein motions observed with elastic network models is similar for atomic and coarser-grained models
Taner Z. Sen et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2006)
Coarse-grained normal mode analysis in structural biology
I Bahar et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)
Functional motions can be extracted from on-lattice construction of protein structures
P Doruker et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
Understanding protein flexibility through dimensionality reduction
ML Teodoro et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2003)
Important fluctuation dynamics of large protein structures are preserved upon coarse-grained renormalization
P Doruker et al.
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY (2002)
Relating molecular flexibility to function: A case study of tubulin
O Keskin et al.
BIOPHYSICAL JOURNAL (2002)
Molecular mechanisms of chaperonin GroEL-GroES function
O Keskin et al.
BIOCHEMISTRY (2002)
Dynamics of large proteins through hierarchical levels of coarse-grained structures
P Doruker et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2002)
Conformational change of proteins arising from normal mode calculations
F Tama et al.
PROTEIN ENGINEERING (2001)
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan et al.
BIOPHYSICAL JOURNAL (2001)
Proteins with similar architecture exhibit similar large-scale dynamic behavior
O Keskin et al.
BIOPHYSICAL JOURNAL (2000)
Relating the structure of HIV-1 reverse transcriptase to its processing step
RL Jernigan et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2000)