4.6 Article

TEfinder: A Bioinformatics Pipeline for Detecting New Transposable Element Insertion Events in Next-Generation Sequencing Data

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Genetics & Heredity

Transposable Elements: A Common Feature of Neurodevelopmental and Neurodegenerative Disorders

Marie E. Jonsson et al.

TRENDS IN GENETICS (2020)

Article Biochemistry & Molecular Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

Enis Afgan et al.

NUCLEIC ACIDS RESEARCH (2018)

Review Biotechnology & Applied Microbiology

Ten things you should know about transposable elements

Guillaume Bourque et al.

GENOME BIOLOGY (2018)

Article Microbiology

Improved Assembly of Reference Genome Fusarium oxysporum f. sp. lycopersici Strain Fol4287

Dilay Hazal Ayhan et al.

MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)

Article Biochemistry & Molecular Biology

The Mobile Element Locator Tool (MELT): population-scale mobile element discovery and biology

Eugene J. Gardner et al.

GENOME RESEARCH (2017)

Review Genetics & Heredity

Transposable Elements Direct The Coevolution between Plants and Microbes

Michael F. Seidl et al.

TRENDS IN GENETICS (2017)

Review Oncology

Transposable elements in cancer

Kathleen H. Burns

NATURE REVIEWS CANCER (2017)

Article Biotechnology & Applied Microbiology

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data

Jane Hawkey et al.

BMC GENOMICS (2015)

Article Multidisciplinary Sciences

A global reference for human genetic variation

David M. Altshuler et al.

NATURE (2015)

Article Genetics & Heredity

Repbase Update, a database of repetitive elements in eukaryotic genomes

Weidong Bao et al.

MOBILE DNA (2015)

Article Biochemistry & Molecular Biology

TEMP: a computational method for analyzing transposable element polymorphism in populations

Jiali Zhuang et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Multidisciplinary Sciences

Patterns of population epigenomic diversity

Robert J. Schmitz et al.

NATURE (2013)

Review Genetics & Heredity

Active Transposition in Genomes

Cheng Ran Lisa Huang et al.

ANNUAL REVIEW OF GENETICS, VOL 46 (2012)

Article Biochemical Research Methods

The GEM mapper: fast, accurate and versatile alignment by filtration

Santiago Marco-Sola et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

DNA Transposons: Nature and Applications in Genomics

Martin Munoz-Lopez et al.

CURRENT GENOMICS (2010)

Article Multidisciplinary Sciences

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Li-Jun Ma et al.

NATURE (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Review Genetics & Heredity

A unified classification system for eukaryotic transposable elements

Thomas Wicker et al.

NATURE REVIEWS GENETICS (2007)

Article Biochemical Research Methods

De novo identification of repeat families in large genomes

AL Price et al.

BIOINFORMATICS (2005)