相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike-in standard
Olivier Zemb et al.
MICROBIOLOGYOPEN (2020)
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations
Raphael Eisenhofer et al.
TRENDS IN MICROBIOLOGY (2019)
Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces
Aleksandra Checinska Sielaff et al.
MICROBIOME (2019)
Establishing microbial composition measurement standards with reference frames
James T. Morton et al.
NATURE COMMUNICATIONS (2019)
A field guide for the compositional analysis of any-omics data
Thomas P. Quinn et al.
GIGASCIENCE (2019)
Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome
Andrew J. Gasparrini et al.
NATURE MICROBIOLOGY (2019)
Microbial Community Profiling in Intensive Care Units Expose Limitations in Current Sanitary Standards
Lucas Ferreira Ribeiro et al.
FRONTIERS IN PUBLIC HEALTH (2019)
Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities
Duo Jiang et al.
FRONTIERS IN GENETICS (2019)
Uncovering the hidden microbiota in hospital and built environments: New approaches and solutions
Ana P. Christoff et al.
EXPERIMENTAL BIOLOGY AND MEDICINE (2019)
Visualization in Bayesian workflow
Jonah Gabry et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY (2019)
Understanding sequencing data as compositions: an outlook and review
Thomas P. Quinn et al.
BIOINFORMATICS (2018)
Best practices for analysing microbiomes
Rob Knight et al.
NATURE REVIEWS MICROBIOLOGY (2018)
Recognizing the reagent microbiome
Marcus C. de Goffau et al.
NATURE MICROBIOLOGY (2018)
Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC
Aki Vehtari et al.
STATISTICS AND COMPUTING (2017)
brms: An R Package for Bayesian Multilevel Models Using Stan
Paul-Christian Buerkner
JOURNAL OF STATISTICAL SOFTWARE (2017)
Stan: A Probabilistic Programming Language
Bob Carpenter et al.
JOURNAL OF STATISTICAL SOFTWARE (2017)
Quantitative microbiome profiling links gut community variation to microbial load
Doris Vandeputte et al.
NATURE (2017)
Strains, functions and dynamics in the expanded Human Microbiome Project
Jason Lloyd-Price et al.
NATURE (2017)
A communal catalogue reveals Earth's multiscale microbial diversity
Luke R. Thompson et al.
NATURE (2017)
Bacterial colonization and succession in a newly opened hospital
Simon Lax et al.
SCIENCE TRANSLATIONAL MEDICINE (2017)
Modeling continuous response variables using ordinal regression
Qi Liu et al.
STATISTICS IN MEDICINE (2017)
Microbiome Datasets Are Compositional: And This Is Not Optional
Gregory B. Gloor et al.
FRONTIERS IN MICROBIOLOGY (2017)
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir et al.
MSYSTEMS (2017)
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
Daryl M. Gohl et al.
NATURE BIOTECHNOLOGY (2016)
Microorganisms in Confined Habitats: Microbial Monitoring and Control of Intensive Care Units, Operating Rooms, Cleanrooms and the International Space Station
Maximilian Mora et al.
FRONTIERS IN MICROBIOLOGY (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
Sources of PCR-induced distortions in high-throughput sequencing data sets
Justus M. Kebschull et al.
NUCLEIC ACIDS RESEARCH (2015)
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
Susannah J. Salter et al.
BMC BIOLOGY (2014)
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Pablo Yarza et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
Paul J. McMurdie et al.
PLOS ONE (2013)
The ignored diversity: complex bacterial communities in intensive care units revealed by 16S pyrosequencing
Lisa Oberauner et al.
SCIENTIFIC REPORTS (2013)
Architectural design influences the diversity and structure of the built environment microbiome
Steven W. Kembel et al.
ISME JOURNAL (2012)
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
J. Gregory Caporaso et al.
ISME JOURNAL (2012)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria
Rudolph Spangler et al.
PLOS ONE (2009)
Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies
Yong Wang et al.
PLOS ONE (2009)
分享论文
