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Roberta Gargiulo et al.
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Environment-dependent introgression from Quercus dentata to a coastal ecotype of Quercus mongolica var. crispula in northern Japan
Teruyoshi Nagamitsu et al.
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Andrew L. Hipp et al.
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Luisa Bresadola et al.
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Rowan J. Schley et al.
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Rongkai Wang et al.
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Natalia Cristina Aguirre et al.
AGRONOMY-BASEL (2019)
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Joanna Meger et al.
TREE GENETICS & GENOMES (2019)
Heritability and genetic architecture of reproduction-related traits in a temperate oak species
Thomas Caignard et al.
TREE GENETICS & GENOMES (2019)
Performance and precision of double digestion RAD (ddRAD) genotyping in large multiplexed datasets of marine fish species
F. Maroso et al.
MARINE GENOMICS (2018)
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Shannon J. O'Leary et al.
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RADseq approaches and applications for forest tree genetics
Thomas L. Parchman et al.
TREE GENETICS & GENOMES (2018)
A reference genome of the European beech (Fagus sylvatica L.)
Bagdevi Mishra et al.
GIGASCIENCE (2018)
Genetic variation and signatures of natural selection in populations of European beech (Fagus sylvatica L.) along precipitation gradients
Laura Cuervo-Alarcon et al.
TREE GENETICS & GENOMES (2018)
Oak genome reveals facets of long lifespan
Christophe Plomion et al.
NATURE PLANTS (2018)
Phylogenomic inferences from reference-mapped and de novo assembled short-read sequence data using RADseq sequencing of California white oaks (Quercus section Quercus)
Sorel Fitz-Gibbon et al.
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Whole-genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations
Angela P. Fuentes-Pardo et al.
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Nucleotide polymorphisms associated with climate, phenology and physiological traits in European beech (Fagus sylvatica L.)
Diana Krajmerova et al.
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Retrotransposon distribution and copy number variation in gymnosperm genomes
Angelika Voronova et al.
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RADseq dataset with 90% missing data fully resolves recent radiation of Petalidium (Acanthaceae) in the ultra-arid deserts of Namibia
Erin A. Tripp et al.
ECOLOGY AND EVOLUTION (2017)
GBS-Based Genomic Selection for Pea Grain Yield under Severe Terminal Drought
Paolo Annicchiarico et al.
PLANT GENOME (2017)
Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data
Masaaki Kobayashi et al.
DNA RESEARCH (2017)
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels et al.
BIOINFORMATICS (2016)
Finding the right coverage: the impact of coverage and sequence quality on single nucleotide polymorphism genotyping error rates
Emily D. Fountain et al.
MOLECULAR ECOLOGY RESOURCES (2016)
Harnessing the power of RADseq for ecological and evolutionary genomics
Kimberly R. Andrews et al.
NATURE REVIEWS GENETICS (2016)
Genome-environment association study suggests local adaptation to climate at the regional scale in Fagus sylvatica
Andrea R. Pluess et al.
NEW PHYTOLOGIST (2016)
Application of genotyping by sequencing technology to a variety of crop breeding programs
Changsoo Kim et al.
PLANT SCIENCE (2016)
First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Nee (Fagaceae)
Victoria L. Sork et al.
G3-GENES GENOMES GENETICS (2016)
Genome sequence of the olive tree, Olea europaea
Fernando Cruz et al.
GIGASCIENCE (2016)
Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies
Davoud Torkamaneh et al.
PLOS ONE (2016)
Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq)
Carly F. Graham et al.
MOLECULAR ECOLOGY RESOURCES (2015)
A candidate gene-based association study reveals SNPs significantly associated with bud burst in European beech (Fagus sylvatica L.)
Markus Mueller et al.
TREE GENETICS & GENOMES (2015)
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants
Chibuikem I. N. Unamba et al.
FRONTIERS IN PLANT SCIENCE (2015)
Genome measures used for quality control are dependent on gene function and ancestry
Jing Wang et al.
BIOINFORMATICS (2015)
Restriction site-associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
A. Mastretta-Yanes et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Sequencing and Assembly of the 22-Gb Loblolly Pine Genome
Aleksey Zimin et al.
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The genome of Eucalyptus grandis
Alexander A. Myburg et al.
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Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species
Adam Healey et al.
PLANT METHODS (2014)
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
Jonathan B. Puritz et al.
PEERJ (2014)
Seeing the forest through the trees: comprehensive inference on individual mating patterns in a mixed stand of Quercus robur and Q-petraea
Igor J. Chybicki et al.
ANNALS OF BOTANY (2013)
Accuracy Estimation and Parameter Advising for Protein Multiple Sequence Alignment
John Kececioglu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2013)
Special features of RAD Sequencing data: implications for genotyping
John W. Davey et al.
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RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
B. Arnold et al.
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Stacks: an analysis tool set for population genomics
Julian Catchen et al.
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Assessing the Impact of Differential Genotyping Errors on Rare Variant Tests of Association
Morgan Mayer-Jochimsen et al.
PLOS ONE (2013)
NAVIGATING THE TIP OF THE GENOMIC ICEBERG: NEXT-GENERATION SEQUENCING FOR PLANT SYSTEMATICS
Shannon C. K. Straub et al.
AMERICAN JOURNAL OF BOTANY (2012)
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3
Pablo Cingolani et al.
FLY (2012)
Biological Flora of the British Isles: Fagus sylvatica
John R. Packham et al.
JOURNAL OF ECOLOGY (2012)
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
Brant K. Peterson et al.
PLOS ONE (2012)
Comparative analysis of algorithms for next-generation sequencing read alignment
Matthew Ruffalo et al.
BIOINFORMATICS (2011)
The variant call format and VCFtools
Petr Danecek et al.
BIOINFORMATICS (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Genotype and SNP calling from next-generation sequencing data
Rasmus Nielsen et al.
NATURE REVIEWS GENETICS (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire et al.
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Fast and accurate long-read alignment with Burrows-Wheeler transform
Heng Li et al.
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A survey of sequence alignment algorithms for next-generation sequencing
Heng Li et al.
BRIEFINGS IN BIOINFORMATICS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Influence of tree species on understory vegetation diversity and mechanisms involved - A critical review for temperate and boreal forests
Stephane Barbier et al.
FOREST ECOLOGY AND MANAGEMENT (2008)
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
Nathan A. Baird et al.
PLOS ONE (2008)
Microarray-based genomic selection for high-throughput resequencing
David T. Okou et al.
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The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan et al.
SCIENCE (2006)
Galaxy: A platform for interactive large-scale genome analysis
B Giardine et al.
GENOME RESEARCH (2005)
An SNP map of the human genome generated by reduced representation shotgun sequencing
D Altshuler et al.
NATURE (2000)
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