相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Incidence of co-infections and superinfections in hospitalized patients with COVID-19: a retrospective cohort study
Carolina Garcia-Vidal et al.
CLINICAL MICROBIOLOGY AND INFECTION (2021)
High prevalence of SARS-CoV-2 and influenza A virus (H1N1) coinfection in dead patients in Northeastern Iran
Seyed A. Hashemi et al.
JOURNAL OF MEDICAL VIROLOGY (2021)
Clinical and radiological diagnosis of non-SARS-CoV-2 viruses in the era of COVID-19 pandemic
Aylin O. Alpaydin et al.
JOURNAL OF MEDICAL VIROLOGY (2021)
Concomitant Marked Decline in Prevalence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Other Respiratory Viruses Among Symptomatic Patients Following Public Health Interventions in Australia: Data from St Vincent's Hospital and Associated Screening Clinics, Sydney, NSW
Deborah Marriott et al.
CLINICAL INFECTIOUS DISEASES (2021)
Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding
Roujian Lu et al.
LANCET (2020)
Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study
Nanshan Chen et al.
LANCET (2020)
Higher frequency of vertebrate-infecting viruses in the gut of infants born to mothers with type 1 diabetes
Ki Wook Kim et al.
PEDIATRIC DIABETES (2020)
Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens
David Kim et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2020)
Presenting Characteristics, Comorbidities, and Outcomes Among 5700 Patients Hospitalized With COVID-19 in the New York City Area
Safiya Richardson et al.
JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION (2020)
Co-infections among patients with COVID-19: The need for combination therapy with non-anti-SARS-CoV-2 agents?
Chih-Cheng Lai et al.
JOURNAL OF MICROBIOLOGY IMMUNOLOGY AND INFECTION (2020)
Bacterial co-infection and secondary infection in patients with COVID-19: a living rapid review and meta-analysis
Bradley J. Langford et al.
CLINICAL MICROBIOLOGY AND INFECTION (2020)
The microbial coinfection in COVID-19
Xi Chen et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2020)
Naturally occurring SARS-CoV-2 gene deletions close to the spike S1/S2 cleavage site in the viral quasispecies of COVID19 patients
Cristina Andres et al.
EMERGING MICROBES & INFECTIONS (2020)
Community-acquired viral respiratory infections amongst hospitalized inpatients during a COVID-19 outbreak in Singapore: co-infection and clinical outcomes
Liang En Wee et al.
JOURNAL OF CLINICAL VIROLOGY (2020)
Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling
Rebecca J. Rockett et al.
NATURE MEDICINE (2020)
Discovery and Genomic Characterization of a 382-Nucleotide Deletion in ORF7b and ORF8 during the Early Evolution of SARS-CoV-2
Yvonne C. F. Su et al.
MBIO (2020)
Nosocomial outbreak of SARS-CoV-2 infection in a haematological unit - High mortality rate in infected patients with haematologic malignancies
Monika M. Biernat et al.
JOURNAL OF CLINICAL VIROLOGY (2020)
Effects of a major deletion in the SARS-CoV-2 genome on the severity of infection and the inflammatory response: an observational cohort study
Barnaby E. Young et al.
LANCET (2020)
Tracking the COVID-19 pandemic in Australia using genomics
Torsten Seemann et al.
NATURE COMMUNICATIONS (2020)
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
Rowena A. Bull et al.
NATURE COMMUNICATIONS (2020)
SARS-CoV-2 genomic surveillance in Taiwan revealed novel ORF8-deletion mutant and clade possibly associated with infections in Middle East
Yu-Nong Gong et al.
EMERGING MICROBES & INFECTIONS (2020)
An emergent clade of SARS-CoV-2 linked to returned travellers from Iran
John-Sebastian Eden et al.
VIRUS EVOLUTION (2020)
Higher abundance of enterovirus A species in the gut of children with islet autoimmunity
Ki Wook Kim et al.
SCIENTIFIC REPORTS (2019)
Choice of assembly software has a critical impact on virome characterisation
Thomas D. S. Sutton et al.
MICROBIOME (2019)
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda
Akshaya Ramesh et al.
PLOS ONE (2019)
Distinct Gut Virome Profile of Pregnant Women With Type 1 Diabetes in the ENDIA Study
Ki Wook Kim et al.
OPEN FORUM INFECTIOUS DISEASES (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Maximal viral information recovery from sequence data using VirMAP
Nadim J. Ajami et al.
NATURE COMMUNICATIONS (2018)
Virome Capture Sequencing Enables Sensitive Viral Diagnosis and Comprehensive Virome Analysis
Thomas Briese et al.
MBIO (2015)
RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
Yongan Zhao et al.
BIOINFORMATICS (2012)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
Daniel C. Koboldt et al.
GENOME RESEARCH (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
Heng Li
BIOINFORMATICS (2011)
Integrative genomics viewer
James T. Robinson et al.
NATURE BIOTECHNOLOGY (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)