相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。RNA Sequencing of the NCI-60: Integration into CellMiner and CellMiner CDB
William C. Reinhold et al.
CANCER RESEARCH (2019)
Targeting Super-Enhancers as a Therapeutic Strategy for Cancer Treatment
Yi He et al.
FRONTIERS IN PHARMACOLOGY (2019)
SEdb: a comprehensive human super-enhancer database
Yong Jiang et al.
NUCLEIC ACIDS RESEARCH (2019)
COSMIC: the Catalogue Of Somatic Mutations In Cancer
John G. Tate et al.
NUCLEIC ACIDS RESEARCH (2019)
H4K20me3 co-localizes with activating histone modifications at transcriptionally dynamic regions in embryonic stem cells
Jian Xu et al.
BMC GENOMICS (2018)
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
Han Chen et al.
CELL (2018)
Heterochromatin: Guardian of the Genome
Aniek Janssen et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 34 (2018)
Defective Nuclear Lamina in Aneuploidy and Carcinogenesis
Elizabeth R. Smith et al.
FRONTIERS IN ONCOLOGY (2018)
The NCI-60 Methylome and Its Integration into CellMiner
William C. Reinhold et al.
CANCER RESEARCH (2017)
CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
Gang Ren et al.
MOLECULAR CELL (2017)
Chromatin-state discovery and genome annotation with ChromHMM
Jason Ernst et al.
NATURE PROTOCOLS (2017)
Nuclear topology modulates the mutational landscapes of cancer genomes
Kyle S. Smith et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Epigenetic plasticity and the hallmarks of cancer
William A. Flavahan et al.
SCIENCE (2017)
SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation
Benjamin L. Kidder et al.
EPIGENETICS & CHROMATIN (2017)
Nuclear topology modulates the mutational landscapes of cancer genomes
Kyle S. Smith et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2017)
Intervene: a tool for intersection and visualization of multiple gene or genomic region sets
Aziz Khan et al.
BMC BIOINFORMATICS (2017)
Transcriptional Addiction in Cancer
James E. Bradner et al.
CELL (2017)
A map of mobile DNA insertions in the NCI-60 human cancer cell panel
John G. Zampella et al.
MOBILE DNA (2016)
The Role of Chromosome Domains in Shaping the Functional Genome
Tom Sexton et al.
CELL (2015)
Integrative analysis of 111 reference human epigenomes
Anshul Kundaje et al.
NATURE (2015)
Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes
Kaifu Chen et al.
NATURE GENETICS (2015)
Constitutive heterochromatin formation and transcription in mammals
Nehme Saksouk et al.
EPIGENETICS & CHROMATIN (2015)
The dynamic control of signal transduction networks in cancer cells
Walter Kolch et al.
NATURE REVIEWS CANCER (2015)
H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency
Berenice A. Benayoun et al.
CELL (2014)
Dedifferentiation and reprogramming: origins of cancer stem cells
Dinorah Friedmann-Morvinski et al.
EMBO REPORTS (2014)
Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
Pouya Kheradpour et al.
NUCLEIC ACIDS RESEARCH (2014)
High Resolution Copy Number Variation Data in the NCI-60 Cancer Cell Lines from Whole Genome Microarrays Accessible through CellMiner
Sudhir Varma et al.
PLOS ONE (2014)
KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation
Benjamin L. Kidder et al.
GENOME BIOLOGY (2014)
The Exomes of the NCI-60 Panel: A Genomic Resource for Cancer Biology and Systems Pharmacology
Ogan D. Abaan et al.
CANCER RESEARCH (2013)
Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
Jakob Loven et al.
CELL (2013)
Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues
Jiang Zhu et al.
CELL (2013)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Super-Enhancers in the Control of Cell Identity and Disease
Denes Hnisz et al.
CELL (2013)
Cumulative Haploinsufficiency and Triplosensitivity Drive Aneuploidy Patterns and Shape the Cancer Genome
Teresa Davoli et al.
CELL (2013)
Tumour heterogeneity and cancer cell plasticity
Corbin E. Meacham et al.
NATURE (2013)
Epigenetic Reprogramming in Cancer
Mario L. Suva et al.
SCIENCE (2013)
Human housekeeping genes, revisited
Eli Eisenberg et al.
TRENDS IN GENETICS (2013)
Global Proteome Analysis of the NCI-60 Cell Line Panel
Amin Moghaddas Gholami et al.
CELL REPORTS (2013)
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host
Winston Timp et al.
NATURE REVIEWS CANCER (2013)
CellMiner: A Web-Based Suite of Genomic and Pharmacologic Tools to Explore Transcript and Drug Patterns in the NCI-60 Cell Line Set
William C. Reinhold et al.
CANCER RESEARCH (2012)
Comparative Epigenomic Annotation of Regulatory DNA
Shu Xiao et al.
CELL (2012)
Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome
Abdenour Soufi et al.
CELL (2012)
CTCF: insights into insulator function during development
Martin Herold et al.
DEVELOPMENT (2012)
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
Jordi Barretina et al.
NATURE (2012)
A map of the cis-regulatory sequences in the mouse genome
Yin Shen et al.
NATURE (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Transcription factors: from enhancer binding to developmental control
Francois Spitz et al.
NATURE REVIEWS GENETICS (2012)
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
Matthew T. Maurano et al.
SCIENCE (2012)
Metabolite Profiling Identifies a Key Role for Glycine in Rapid Cancer Cell Proliferation
Mohit Jain et al.
SCIENCE (2012)
Increased methylation variation in epigenetic domains across cancer types
Kasper Daniel Hansen et al.
NATURE GENETICS (2011)
ChIP-Seq: technical considerations for obtaining high-quality data
Benjamin L. Kidder et al.
NATURE IMMUNOLOGY (2011)
Embryonic stem cell-specific signatures in cancer: insights into genomic regulatory networks and implications for medicine
Jonghwan Kim et al.
GENOME MEDICINE (2011)
Mammalian Su(var) Genes in Chromatin Control
Barna D. Fodor et al.
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 26 (2010)
GOSemSim: an R package for measuring semantic similarity among GO terms and gene products
Guangchuang Yu et al.
BIOINFORMATICS (2010)
Derepression of CLDN3 and CLDN4 during ovarian tumorigenesis is associated with loss of repressive histone modifications
Mi Jeong Kwon et al.
CARCINOGENESIS (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean et al.
NATURE BIOTECHNOLOGY (2010)
Reexpression of epigenetically silenced AML tumor suppressor genes by SUV39H1 inhibition
A. Lakshmikuttyamma et al.
ONCOGENE (2010)
Histone H3K27ac separates active from poised enhancers and predicts developmental state
Menno P. Creyghton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Higher-order Genome Organization in Human Disease
Tom Misteli
COLD SPRING HARBOR PERSPECTIVES IN BIOLOGY (2010)
Epigenetic Dysregulation in Cancer
Andrew G. Muntean et al.
AMERICAN JOURNAL OF PATHOLOGY (2009)
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
Chongzhi Zang et al.
BIOINFORMATICS (2009)
Histone modifications at human enhancers reflect global cell-type-specific gene expression
Nathaniel D. Heintzman et al.
NATURE (2009)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3K4/K27 trimethylation
Shaun D. Fouse et al.
CELL STEM CELL (2008)
The enhanceosome
Daniel Panne
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse
Gunnar Schotta et al.
GENES & DEVELOPMENT (2008)
Bivalent domains enforce transcriptional memory of DNA methylated genes in cancer cells
Jairo Rodriguez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA Methylation in an Exogenous Promoter CpG Island
Heather M. O'Hagan et al.
PLOS GENETICS (2008)
Drug sensitivity prediction by CpG island methylation profile in the NCI-60 cancer cell line panel
Lanlan Shen et al.
CANCER RESEARCH (2007)
High-resolution profiling of histone methylations in the human genome
Artern Barski et al.
CELL (2007)
Pharmacologic disruption of polycomb-repressive complex 2-mediated gene repression selectively induces apoptosis in cancer cells
Jing Tan et al.
GENES & DEVELOPMENT (2007)
Treatment of early non-small cell lung cancer, stage IA, by image-guided robotic stereotactic radioablation- CyberKnife
William T. Brown et al.
CANCER JOURNAL (2007)
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
Michael Weber et al.
NATURE GENETICS (2007)
The NCI60 human tumour cell line anticancer drug screen
Robert H. Shoemaker
NATURE REVIEWS CANCER (2006)
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
BE Bernstein et al.
CELL (2006)
Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer
MF Fraga et al.
NATURE GENETICS (2005)
The profile of repeat-associated histone lysine methylation states in the mouse epigenome
JHA Martens et al.
EMBO JOURNAL (2005)
PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis
D Karachentsev et al.
GENES & DEVELOPMENT (2005)
Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
R Schneider et al.
NATURE CELL BIOLOGY (2004)
A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin
G Schotta et al.
GENES & DEVELOPMENT (2004)
Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome
M Lachner et al.
COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY (2004)
Heterochromatin and tri-methylated lysine 20 of histone H4 in animals
N Kourmouli et al.
JOURNAL OF CELL SCIENCE (2004)
Heterochromatin and epigenetic control of gene expression
SIS Grewal et al.
SCIENCE (2003)
Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 bv Polvcomb and HP1 chromodomains
W Fischle et al.
GENES & DEVELOPMENT (2003)
Histone lysine methylation: a signature for chromatin function
RJ Sims et al.
TRENDS IN GENETICS (2003)
Active genes are tri-methylated at K4 of histone H3
H Santos-Rosa et al.
NATURE (2002)
The fundamental role of epigenetic events in cancer
PA Jones et al.
NATURE REVIEWS GENETICS (2002)
Chemosensitivity prediction by transcriptional profiling
JE Staunton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Role of histone H3 lysine 9 methylation in epigenetic control of heterochromatin assembly
J Nakayam et al.
SCIENCE (2001)
分享论文
