相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Predicting coexistence in experimental ecological communities
Daniel S. Maynard et al.
NATURE ECOLOGY & EVOLUTION (2020)
Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut
Kern Rei Chng et al.
NATURE ECOLOGY & EVOLUTION (2020)
Causal relationships among the gut microbiome, short-chain fatty acids and metabolic diseases
Serena Sanna et al.
NATURE GENETICS (2019)
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0
Laurent Heirendt et al.
NATURE PROTOCOLS (2019)
Available energy fluxes drive a transition in the diversity, stability, and functional structure of microbial communities
Robert Marsland et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Use and abuse of correlation analyses in microbial ecology
Alex Carr et al.
ISME JOURNAL (2019)
Modelling approaches for studying the microbiome
Manish Kumar et al.
NATURE MICROBIOLOGY (2019)
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
Alan R. Pacheco et al.
NATURE COMMUNICATIONS (2019)
Gut microbiome structure and metabolic activity in inflammatory bowel disease
Eric A. Franzosa et al.
NATURE MICROBIOLOGY (2019)
Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
Cecilia Noecker et al.
MSYSTEMS (2019)
Evidence for a multi-level trophic organization of the human gut microbiome
Tong Wang et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Deciphering microbial interactions in synthetic human gut microbiome communities
Ophelia S. Venturelli et al.
MOLECULAR SYSTEMS BIOLOGY (2018)
Diversity, Stability, and Reproducibility in Stochastically Assembled Microbial Ecosystems
Akshit Goyal et al.
PHYSICAL REVIEW LETTERS (2018)
Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations
Stefan Vet et al.
PLOS ONE (2018)
Urban Diets Linked to Gut Microbiome and Metabolome Alterations in Children: A Comparative Cross-Sectional Study in Thailand
Juma Kisuse et al.
FRONTIERS IN MICROBIOLOGY (2018)
Towards predicting the environmental metabolome from metagenomics with a mechanistic model
Daniel R. Garza et al.
NATURE MICROBIOLOGY (2018)
Metabolic adaptations underlying genome flexibility in prokaryotes
Akshit Goyal
PLOS GENETICS (2018)
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Stefania Magnusdottir et al.
NATURE BIOTECHNOLOGY (2017)
Using null models to infer microbial co-occurrence networks
Nora Connor et al.
PLOS ONE (2017)
Mapping the ecological networks of microbial communities
Yandong Xiao et al.
NATURE COMMUNICATIONS (2017)
Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis
Jaeyun Sung et al.
NATURE COMMUNICATIONS (2017)
Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions
Babak Momeni et al.
ELIFE (2017)
Love Thy Neighbor: Sharing and Cooperativity in the Gut Microbiota
Nathan T. Porter et al.
CELL HOST & MICROBE (2016)
Microbiome-wide association studies link dynamic microbial consortia to disease
Jack A. Gilbert et al.
NATURE (2016)
Gut Microbiota Profiling: Metabolomics Based Approach to Unravel Compounds Affecting Human Health
Pamela Vernocchi et al.
FRONTIERS IN MICROBIOLOGY (2016)
Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut
Audrey Riviere et al.
FRONTIERS IN MICROBIOLOGY (2016)
Using Genome-scale Models to Predict Biological Capabilities
Edward J. O'Brien et al.
CELL (2015)
Modelling the emergent dynamics and major metabolites of the human colonic microbiota
Helen Kettle et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Monoculture parameters successfully predict coculture growth kinetics of Bacteroides thetaiotaomicron and two Bifidobacterium strains
A. S. Van Wey et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2014)
Functional and phylogenetic assembly of microbial communities in the human microbiome
Afrah Shafquat et al.
TRENDS IN MICROBIOLOGY (2014)
Understanding the interactions between bacteria in the human gut through metabolic modeling
Saeed Shoaie et al.
SCIENTIFIC REPORTS (2013)
Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota
Richard R. Stein et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut
Almut Heinken et al.
GUT MICROBES (2013)
The Impact of the Gut Microbiota on Human Health: An Integrative View
Jose C. Clemente et al.
CELL (2012)
A metagenome-wide association study of gut microbiota in type 2 diabetes
Junjie Qin et al.
NATURE (2012)
Diversity, stability and resilience of the human gut microbiota
Catherine A. Lozupone et al.
NATURE (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
APPLICATIONS OF NEXT-GENERATION SEQUENCING The human microbiome: at the interface of health and disease
Ilseung Cho et al.
NATURE REVIEWS GENETICS (2012)
Microbial Co-occurrence Relationships in the Human Microbiome
Karoline Faust et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Inferring Correlation Networks from Genomic Survey Data
Jonathan Friedman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Eating For Two: How Metabolism Establishes lnterspecies Interactions in the Gut
Michael A. Fischbach et al.
CELL HOST & MICROBE (2011)
Mathematical modelling of carbohydrate degradation by human colonic microbiota
Rafael Munoz-Tamayo et al.
JOURNAL OF THEORETICAL BIOLOGY (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
ESSAY What are the consequences of the disappearing human microbiota?
Martin J. Blaser et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1
Matthew A. Oberhardt et al.
JOURNAL OF BACTERIOLOGY (2008)
Kinetics and metabolism of Bifidobacterium adolescentis MB 239 growing on glucose, galactose, lactose, and galactooligosaccharides
Alberto Amaretti et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
Sylvia H. Duncan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Cross-feeding between Bifidobacterium longum BB536 and acetate-converting, butyrate-producing colon bacteria during growth on oligofructose
Gwen Falony et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
In vitro kinetic analysis of oligofructose consumption by Bacteroides and Bifidobacterium spp. indicates different degradation mechanisms
R Van der Meulen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
The origin of correlations in metabolomics data
Diogo Camacho et al.
METABOLOMICS (2005)
Observing and interpreting correlations in metabolomic networks
R Steuer et al.
BIOINFORMATICS (2003)