相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Improved protein structure prediction using potentials from deep learning
Andrew W. Senior et al.
NATURE (2020)
Improved protein structure prediction using predicted interresidue orientations
Jianyi Yang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
refineD: improved protein structure refinement using machine learning based restrained relaxation
Debswapna Bhattacharya
BIOINFORMATICS (2019)
Protein model quality assessment using 3D oriented convolutional neural networks
Guillaume Pages et al.
BIOINFORMATICS (2019)
Evaluation of model refinement in CASP13
Randy J. Read et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Driven to near-experimental accuracy by refinement via molecular dynamics simulations
Lim Heo et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Distance-based protein folding powered by deep learning
Jinbo Xu
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
High-accuracy refinement using Rosetta in CASP13
Hahnbeom Park et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Assessment of protein model structure accuracy estimation in CASP13: Challenges in the era of deep learning
Jonghun Won et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Critical assessment of methods of protein structure prediction (CASP)-Round XIII
Andriy Kryshtafovych et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2019)
Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12
Jurgen Haas et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2018)
Deep convolutional networks for quality assessment of protein folds
Georgy Derevyanko et al.
BIOINFORMATICS (2018)
Protein homology model refinement by large-scale energy optimization
Hahnbeom Park et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Experimental accuracy in protein structure refinement via molecular dynamics simulations
Lim Heo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design
Rebecca F. Alford et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2017)
VoroMQA: Assessment of protein structure quality using interatomic contact areas
Kliment Olechnovic et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2017)
Computational protein structure refinement: almost there, yet still so far to go
Michael Feig
WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2017)
Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules
Hahnbeom Park et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2016)
Assessment of refinement of template-based models in CASP11
Vivek Modi et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2016)
ProQ3: Improved model quality assessments using Rosetta energy terms
Karolis Uziela et al.
SCIENTIFIC REPORTS (2016)
eQuant - A Server for Fast Protein Model Quality Assessment by Integrating High-Dimensional Data and Machine Learning
Sebastian Bittrich et al.
BEYOND DATABASES, ARCHITECTURES AND STRUCTURES, BDAS 2016 (2016)
Relaxation of backbone bond geometry improves protein energy landscape modeling
Patrick Conway et al.
PROTEIN SCIENCE (2014)
lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
Valerio Mariani et al.
BIOINFORMATICS (2013)
High-Resolution Comparative Modeling with RosettaCM
Yifan Song et al.
STRUCTURE (2013)
Improved model quality assessment using ProQ2
Arjun Ray et al.
BMC BIOINFORMATICS (2012)
Assessment of template based protein structure predictions in CASP9
Valerio Mariani et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
QMEAN: A comprehensive scoring function for model quality assessment
Pascal Benkert et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Phaser crystallographic software
Airlie J. McCoy et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2007)
LGA: a method for finding 3D similarities in protein structures
A Zemla
NUCLEIC ACIDS RESEARCH (2003)