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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Valentin Wucher et al.
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Urminder Singh et al.
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Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin
Sean Whalen et al.
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Huacai Wang et al.
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Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
Jianwei Zhang et al.
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Hexaploid wheat (Triticum aestivum) root miRNome analysis in response to salt stress
H. Eren et al.
ANNALS OF APPLIED BIOLOGY (2015)
Long noncoding RNA transcriptome of plants
Jun Liu et al.
PLANT BIOTECHNOLOGY JOURNAL (2015)
Transcriptome-wide investigation of circular RNAs in rice
Tingting Lu et al.
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Biogenesis, identification, and function of exonic circular RNAs
Iju Chen et al.
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CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
Yuan Gao et al.
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Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
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Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis
Huan Wang et al.
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The rise of regulatory RNA
Kevin V. Morris et al.
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miR444a has multiple functions in the rice nitrate-signaling pathway
Yongsheng Yan et al.
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Liya Wei et al.
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Shweta Mehrotra et al.
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
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Repressing the Repressor: A lincRNA as a MicroRNA Sponge in Embryonic Stem Cell Self-Renewal
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Yue Wang et al.
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Sebastian Memczak et al.
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Silin Zhong et al.
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
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Marcella Cesana et al.
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OsSPL14 promotes panicle branching and higher grain productivity in rice
Kotaro Miura et al.
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Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
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PMRD: plant microRNA database
Zhenhai Zhang et al.
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OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)