相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Integrative analysis of reference epigenomes in 20 rice varieties
Lun Zhao et al.
NATURE COMMUNICATIONS (2020)
lncMGPFis a novel positive regulator of muscle growth and regeneration
Wei Lv et al.
JOURNAL OF CACHEXIA SARCOPENIA AND MUSCLE (2020)
Roles of the SPL gene family and miR156 in the salt stress responses of tamarisk (Tamarix chinensis)
Jianwen Wang et al.
BMC PLANT BIOLOGY (2019)
Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
Lun Zhao et al.
NATURE COMMUNICATIONS (2019)
The Pfam protein families database in 2019
Sara El-Gebali et al.
NUCLEIC ACIDS RESEARCH (2019)
Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize
Lu Chen et al.
NEW PHYTOLOGIST (2018)
Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies
Sang-Yoon Shin et al.
BMC GENOMICS (2018)
Rice Information GateWay: A Comprehensive Bioinformatics Platform for Indica Rice Genomes
Jia-Ming Song et al.
MOLECULAR PLANT (2018)
psRNATarget: a plant small RNA target analysis server (2017 release)
Xinbin Dai et al.
NUCLEIC ACIDS RESEARCH (2018)
Differential expression networks and inheritance patterns of long non-coding RNAs in castor bean seeds
Wei Xu et al.
PLANT JOURNAL (2018)
Circular RNA CpG island hypermethylation-associated silencing in human cancer
Humberto J. Ferreira et al.
Oncotarget (2018)
Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development
Xianwen Meng et al.
BMC GENOMICS (2018)
Overexpressing lncRNA LAIR increases grain yield and regulates neighbouring gene cluster expression in rice
Ying Wang et al.
NATURE COMMUNICATIONS (2018)
Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation
Jacob O'Brien et al.
FRONTIERS IN ENDOCRINOLOGY (2018)
Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation
Peter Kindgren et al.
NATURE COMMUNICATIONS (2018)
LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization
Ting Zhao et al.
GENOME BIOLOGY (2018)
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
Valentin Wucher et al.
NUCLEIC ACIDS RESEARCH (2017)
PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea
Urminder Singh et al.
NUCLEIC ACIDS RESEARCH (2017)
Sequencing and de novo assembly of a near complete indica rice genome
Huilong Du et al.
NATURE COMMUNICATIONS (2017)
Comparison of circular RNA prediction tools
Thomas B. Hansen et al.
NUCLEIC ACIDS RESEARCH (2016)
Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA
Xiaoyong Sun et al.
FEBS LETTERS (2016)
Diverse alternative back-splicing and alternative splicing landscape of circular RNAs
Xiao-Ou Zhang et al.
GENOME RESEARCH (2016)
Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin
Sean Whalen et al.
NATURE GENETICS (2016)
A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway
Huacai Wang et al.
PLANT PHYSIOLOGY (2016)
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
Jianwei Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Hexaploid wheat (Triticum aestivum) root miRNome analysis in response to salt stress
H. Eren et al.
ANNALS OF APPLIED BIOLOGY (2015)
Long noncoding RNA transcriptome of plants
Jun Liu et al.
PLANT BIOTECHNOLOGY JOURNAL (2015)
Transcriptome-wide investigation of circular RNAs in rice
Tingting Lu et al.
RNA (2015)
Biogenesis, identification, and function of exonic circular RNAs
Iju Chen et al.
WILEY INTERDISCIPLINARY REVIEWS-RNA (2015)
CIRI: an efficient and unbiased algorithm for de novo circular RNA identification
Yuan Gao et al.
GENOME BIOLOGY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis
Huan Wang et al.
GENOME RESEARCH (2014)
The rise of regulatory RNA
Kevin V. Morris et al.
NATURE REVIEWS GENETICS (2014)
miR444a has multiple functions in the rice nitrate-signaling pathway
Yongsheng Yan et al.
PLANT JOURNAL (2014)
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
Liya Wei et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Repetitive Sequences in Plant Nuclear DNA: Types, Distribution, Evolution and Function
Shweta Mehrotra et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Repressing the Repressor: A lincRNA as a MicroRNA Sponge in Embryonic Stem Cell Self-Renewal
Ee-chun Cheng et al.
DEVELOPMENTAL CELL (2013)
Endogenous miRNA Sponge lincRNA-RoR Regulates Oct4, Nanog, and Sox2 in Human Embryonic Stem Cell Self-Renewal
Yue Wang et al.
DEVELOPMENTAL CELL (2013)
Circular RNAs are a large class of animal RNAs with regulatory potency
Sebastian Memczak et al.
NATURE (2013)
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
Silin Zhong et al.
NATURE BIOTECHNOLOGY (2013)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA
Marcella Cesana et al.
CELL (2011)
OsSPL14 promotes panicle branching and higher grain productivity in rice
Kotaro Miura et al.
NATURE GENETICS (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
PMRD: plant microRNA database
Zhenhai Zhang et al.
NUCLEIC ACIDS RESEARCH (2010)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
NUCLEIC ACIDS RESEARCH (2002)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
