4.8 Article

Survival strategies of ammonia-oxidizing archaea (AOA) in a full-scale WWTP treating mixed landfill leachate containing copper ions and operating at low-intensity of aeration

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

Katharina Kitzinger et al.

NATURE COMMUNICATIONS (2020)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Microbiology

Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment

Katharina Kitzinger et al.

NATURE MICROBIOLOGY (2019)

Article Microbiology

Patterns of thaumarchaeal gene expression in culture and diverse marine environments

Paul Carini et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Multidisciplinary Sciences

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes

Ricardo J. Eloy Alves et al.

NATURE COMMUNICATIONS (2018)

Article Soil Science

Ammonia oxidizing archaea do not respond to ammonium or urea supply in an alkaline soil

Vasileios A. Tzanakakis et al.

APPLIED SOIL ECOLOGY (2018)

Article Biotechnology & Applied Microbiology

Incorporation of C-13-HCO3- by ammonia-oxidizing archaea and bacteria during ammonia oxidation of sludge from a municipal wastewater treatment plant

Preeyaporn Pornkulwat et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Article Ecology

Uncultivated microbes in need of their own taxonomy

Konstantinos T. Konstantinidis et al.

ISME JOURNAL (2017)

Article Biochemistry & Molecular Biology

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

Jaime Huerta-Cepas et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Multidisciplinary Sciences

Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle

K. Dimitri Kits et al.

NATURE (2017)

Article Environmental Sciences

Influence of oxygen availability on the activities of ammonia-oxidizing archaea

Wei Qin et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2017)

Article Engineering, Environmental

Enrichment and characteristics of ammonia-oxidizing archaea in wastewater treatment process

Hongyi Chen et al.

CHEMICAL ENGINEERING JOURNAL (2017)

Article Microbiology

OrthoANI: An improved algorithm and software for calculating average nucleotide identity

Imchang Lee et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)

Review Biochemistry & Molecular Biology

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

Minoru Kanehisa et al.

JOURNAL OF MOLECULAR BIOLOGY (2016)

Article Multidisciplinary Sciences

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea

Jong-Geol Kim et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Engineering, Environmental

Copper deficiency can limit nitrification in biological rapid sand filters for drinking water production

Florian B. Wagner et al.

WATER RESEARCH (2016)

Article Environmental Sciences

A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment

Man-Young Jung et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)

Article Multidisciplinary Sciences

HydDB: A web tool for hydrogenase classification and analysis

Dan Sondergaard et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks et al.

GENOME RESEARCH (2015)

Article Multidisciplinary Sciences

Cyanate as an energy source for nitrifiers

Marton Palatinszky et al.

NATURE (2015)

Article Multidisciplinary Sciences

Structure and mechanism of an active lipid-linked oligosaccharide flippase

Camilo Perez et al.

NATURE (2015)

Article Multidisciplinary Sciences

Genomic and proteomic characterization of Candidatus Nitrosopelagicus brevis: An ammonia-oxidizing archaeon from the open ocean

Alyson E. Santoro et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biotechnology & Applied Microbiology

A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon

Man-Young Jung et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Abundance and diversity based on amoA genes of ammonia-oxidizing archaea and bacteria in ten wastewater treatment systems

Jingfeng Gao et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

circlize implements and enhances circular visualization in R

Zuguang Gu et al.

BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences

Chengwei Luo et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia

Michael Berney et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

Wei Qin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Biotechnology & Applied Microbiology

Transcriptional Response of the Archaeal Ammonia Oxidizer Nitrosopumilus maritimus to Low and Environmentally Relevant Ammonia Concentrations

Tatsunori Nakagawa et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Review Chemistry, Inorganic & Nuclear

Purple acid phosphatase: A journey into the function and mechanism of a colorful enzyme

Gerhard Schenk et al.

COORDINATION CHEMISTRY REVIEWS (2013)

Article Multidisciplinary Sciences

Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea

Neeraja Vajrala et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biochemical Research Methods

Identification and removal of ribosomal RNA sequences from metatranscriptomes

Robert Schmieder et al.

BIOINFORMATICS (2012)

Article Microbiology

Ammonia-oxidizing archaea as main drivers of nitrification in cold-water sponges

Regina Radax et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Review Biochemistry & Molecular Biology

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

James I. Prosser et al.

TRENDS IN MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil

Man-Young Jung et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Environmental Sciences

Ammonia-oxidizing Archaea in Kamchatka Hot Springs

Weidong Zhao et al.

GEOMICROBIOLOGY JOURNAL (2011)

Article Multidisciplinary Sciences

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

Laura E. Lehtovirta-Morley et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

Marc Mussmann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

Maria Tourna et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Cultivation of Autotrophic Ammonia-Oxidizing Archaea from Marine Sediments in Coculture with Sulfur-Oxidizing Bacteria

Byoung-Joon Park et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Multidisciplinary Sciences

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

C. B. Walker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

A scaling normalization method for differential expression analysis of RNA-seq data

Mark D. Robinson et al.

GENOME BIOLOGY (2010)

Article Soil Science

Alternative Methods for Measuring Inorganic, Organic, and Total Dissolved Nitrogen in Soil

Rebecca Hood-Nowotny et al.

SOIL SCIENCE SOCIETY OF AMERICA JOURNAL (2010)

Article Biotechnology & Applied Microbiology

Diversity and Abundance of Ammonia-Oxidizing Archaea in Hydrothermal Vent Chimneys of the Juan de Fuca Ridge

Shufang Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

Willm Martens-Habbena et al.

NATURE (2009)

Review Biochemistry & Molecular Biology

Glycosyltransferases: Structures, functions, and mechanisms

L. L. Lairson et al.

ANNUAL REVIEW OF BIOCHEMISTRY (2008)

Article Multidisciplinary Sciences

Polyphosphate-dependent synthesis of ATP and ADP by the family-2 polyphosphate kinases in bacteria

Boguslaw Nocek et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Microbiology

DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

Johan Goris et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Communities of Archaea and Bacteria in a subsurface radioactive thermal spring in the Austrian Central Alps, and evidence of ammonia-oxidizing Crenarchaeota

Gerhard W. Weidler et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Biotechnology & Applied Microbiology

Bacterial alginates: from biosynthesis to applications

Uwe Remminghorst et al.

BIOTECHNOLOGY LETTERS (2006)

Article Multidisciplinary Sciences

Archaea predominate among ammonia-oxidizing prokaryotes in soils

S. Leininger et al.

NATURE (2006)

Article Biotechnology & Applied Microbiology

Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors

Hee-Deung Park et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Article Multidisciplinary Sciences

Isolation of an autotrophic ammonia-oxidizing marine archaeon

M Könneke et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite

KM Miranda et al.

NITRIC OXIDE-BIOLOGY AND CHEMISTRY (2001)