4.6 Review

Mechanical Regulation of Transcription: Recent Advances

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biotechnology & Applied Microbiology

Uncovering an Organ's Molecular Architecture at Single-Cell Resolution by Spatially Resolved Transcriptomics

Jie Liao et al.

Summary: Spatially resolved transcriptomics techniques provide near-single-cell or even subcellular resolution within tissues, revealing fine-scale cellular heterogeneity and the functional and structural foundations of tissue architecture. Mapping the whole 3D transcriptional landscape of tissues with position-coordinating labels enables massive information across higher dimensions.

TRENDS IN BIOTECHNOLOGY (2021)

Review Cell Biology

Nuclear actin dynamics in gene expression and genome organization

Salla Kyheroinen et al.

SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY (2020)

Review Genetics & Heredity

What Is a Transcriptional Burst?

Edward Tunnacliffe et al.

TRENDS IN GENETICS (2020)

Review Biochemistry & Molecular Biology

Fibrosis and cancer: A strained relationship

Bram Piersma et al.

BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER (2020)

Article Biochemistry & Molecular Biology

Durotaxis

Raimon Sunyer et al.

CURRENT BIOLOGY (2020)

Article Biochemistry & Molecular Biology

Nesprin-2 accumulates at the front of the nucleus during confined cell migration

Patricia M. Davidson et al.

EMBO REPORTS (2020)

Article Multidisciplinary Sciences

Fibroblast rejuvenation by mechanical reprogramming and redifferentiation

Bibhas Roy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Review Biotechnology & Applied Microbiology

Decellularized Extracellular Matrix for Bioengineering Physiomimetic 3D in Vitro Tumor Models

Luis P. Ferreira et al.

TRENDS IN BIOTECHNOLOGY (2020)

Article Multidisciplinary Sciences

Organoid cultures from normal and cancer-prone human breast tissues preserve complex epithelial lineages

Jennifer M. Rosenbluth et al.

NATURE COMMUNICATIONS (2020)

Article Biochemical Research Methods

3D ATAC-PALM: super-resolution imaging of the accessible genome

Liangqi Xie et al.

NATURE METHODS (2020)

Review Biochemistry & Molecular Biology

Cell-cell junctions as sensors and transducers of mechanical forces

Ana Angulo-Urarte et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES (2020)

Article Multidisciplinary Sciences

Nuclear mechanosensing controls MSC osteogenic potential through HDAC epigenetic remodeling

Anouk R. Killaars et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)

Article Multidisciplinary Sciences

The nucleus acts as a ruler tailoring cell responses to spatial constraints

A. J. Lomakin et al.

SCIENCE (2020)

Article Oncology

A framework for advancing our understanding of cancer-associated fibroblasts

Erik Sahai et al.

NATURE REVIEWS CANCER (2020)

Article Multidisciplinary Sciences

Actomyosin contractility-dependent matrix stretch and recoil induces rapid cell migration

William Y. Wang et al.

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

High Quality ATAC-Seq Data Recovered from Cryopreserved Breast Cell Lines and Tissue

Saori Fujiwara et al.

SCIENTIFIC REPORTS (2019)

Article Multidisciplinary Sciences

Nuclear positioning facilitates amoeboid migration along the path of least resistance

Joerg Renkawitz et al.

NATURE (2019)

Review Cell Biology

Mechanics of nuclear membranes

Ashutosh Agrawal et al.

JOURNAL OF CELL SCIENCE (2019)

Review Cell Biology

Integrins as biomechanical sensors of the microenvironment

Jenny Z. Kechagia et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

Regulation of nuclear architecture, mechanics, and nucleocytoplasmic shuttling of epigenetic factors by cell geometric constraints

Farid Alisafaei et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Engineering, Biomedical

Matrix stiffness induces a tumorigenic phenotype in mammary epithelium through changes in chromatin accessibility

Ryan S. Stowers et al.

NATURE BIOMEDICAL ENGINEERING (2019)

Article Cell Biology

Confinement hinders motility by inducing RhoA-mediated nuclear influx, volume expansion, and blebbing

Panagiotis Mistriotis et al.

JOURNAL OF CELL BIOLOGY (2019)

Article Multidisciplinary Sciences

Cell adhesion signals regulate the nuclear receptor activity

Kotaro Sugimoto et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biochemistry & Molecular Biology

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart

Michaela Asp et al.

Review Physics, Multidisciplinary

Mechanical Proofreading: A General Mechanism to Enhance the Fidelity of Information Transfer Between Cells

Joshua M. Brockman et al.

FRONTIERS IN PHYSICS (2019)

Review Engineering, Biomedical

Design of spherically structured 3D in vitro tumor models -Advances and prospects

L. P. Ferreira et al.

ACTA BIOMATERIALIA (2018)

Article Biochemistry & Molecular Biology

A Living Biobank of Breast Cancer Organoids Captures Disease Heterogeneity

Norman Sachs et al.

Review Cell Biology

YAP/TAZ upstream signals and downstream responses

Antonio Totaro et al.

NATURE CELL BIOLOGY (2018)

Article Multidisciplinary Sciences

Laterally confined growth of cells induces nuclear reprogramming in the absence of exogenous biochemical factors

Bibhas Roy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Multidisciplinary Sciences

Cell contraction induces long-ranged stress stiffening in the extracellular matrix

Yu Long Han et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Pharmacology & Pharmacy

Three-Dimensional in Vitro Cell Culture Models in Drug Discovery and Drug Repositioning

Sigrid A. Langhans

FRONTIERS IN PHARMACOLOGY (2018)

Review Cell Biology

Feeling Stress: The Mechanics of Cancer Progression and Aggression

Josette M. Northcott et al.

FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY (2018)

Article Biochemical Research Methods

Quantifying transcription factor binding dynamics at the single-molecule level in live cells

Diego M. Presman et al.

METHODS (2017)

Article Cell Biology

Chromatin and lamin A determine two different mechanical response regimes of the cell nucleus

Andrew D. Stephens et al.

MOLECULAR BIOLOGY OF THE CELL (2017)

Article Multidisciplinary Sciences

Rare cell variability and drug- induced reprogramming as a mode of cancer drug resistance

Sydney M. Shaffer et al.

NATURE (2017)

Review Cell Biology

Regulation of genome organization and gene expression by nuclear mechanotransduction

Caroline Uhler et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Review Cell Biology

Mechanobiology of YAP and TAZ in physiology and disease

Tito Panciera et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2017)

Article Multidisciplinary Sciences

Stem cell migration and mechanotransduction on linear stiffness gradient hydrogels

William J. Hadden et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Review Biochemistry & Molecular Biology

Touch, Tension, and Transduction - The Function and Regulation of Piezo Ion Channels

Jason Wu et al.

TRENDS IN BIOCHEMICAL SCIENCES (2017)

Article Multidisciplinary Sciences

Single-molecule analysis of steroid receptor and cofactor action in living cells

Ville Paakinaho et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

NDP52 activates nuclear myosin VI to enhance RNA polymerase II transcription

Natalia Fili et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

Glucocorticoid receptor signalling activates YAP in breast cancer

Giovanni Sorrentino et al.

NATURE COMMUNICATIONS (2017)

Article Multidisciplinary Sciences

YAP regulates cell mechanics by controlling focal adhesion assembly

Giorgia Nardone et al.

NATURE COMMUNICATIONS (2017)

Article Biochemistry & Molecular Biology

Force Triggers YAP Nuclear Entry by Regulating Transport across Nuclear Pores

Alberto Elosegui-Artola et al.

Article Chemistry, Physical

Hydrogels with tunable stress relaxation regulate stem cell fate and activity

Ovijit Chaudhuri et al.

NATURE MATERIALS (2016)

Article Multidisciplinary Sciences

Nuclear deformability and telomere dynamics are regulated by cell geometric constraints

Ekta Makhija et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Nanoscience & Nanotechnology

Strain Stiffening of Fibrillar Collagen during Individual and Collective Cell Migration Identified by AFM Nanoindentation

Sjoerd van Helvert et al.

ACS APPLIED MATERIALS & INTERFACES (2016)

Article Biochemistry & Molecular Biology

A Mechanogenetic Toolkit for Interrogating Cell Signaling in Space and Time

Daeha Seo et al.

Article Chemistry, Physical

Transcription upregulation via force-induced direct stretching of chromatin

Arash Tajik et al.

NATURE MATERIALS (2016)

Article Biochemistry & Molecular Biology

Cracking the control of RNA polymerase II elongation by 7SK snRNP and P-TEFb

Alexandre J. C. Quaresma et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Multidisciplinary Sciences

Matrix mechanics controls FHL2 movement to the nucleus to activate p21 expression

Naotaka Nakazawa et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Fibrous nonlinear elasticity enables positive mechanical feedback between cells and ECMs

Matthew S. Hall et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

Nuclear envelope rupture and repair during cancer cell migration

Celine M. Denais et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Collective cell durotaxis emerges from long-range intercellular force transmission

Raimon Sunyer et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity

Samer G. Alam et al.

SCIENTIFIC REPORTS (2016)

Article Biochemistry & Molecular Biology

Cortical Contractility Triggers a Stochastic Switch to Fast Amoeboid Cell Motility

Verena Ruprecht et al.

Article Biochemistry & Molecular Biology

Confinement and Low Adhesion Induce Fast Amoeboid Migration of Slow Mesenchymal Cells

Yan-Jun Liu et al.

Article Biochemistry & Molecular Biology

Nuclear F-actin Formation and Reorganization upon Cell Spreading

Matthias Plessner et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Cell Biology

Non-muscle myosin IIB is critical for nuclear translocation during 3D invasion

Dustin G. Thomas et al.

JOURNAL OF CELL BIOLOGY (2015)

Article Cell Biology

Adhesion to fibronectin regulates Hippo signaling via the FAK-Src-PI3K pathway

Nam-Gyun Kim et al.

JOURNAL OF CELL BIOLOGY (2015)

Article Multidisciplinary Sciences

Single-cell chromatin accessibility reveals principles of regulatory variation

Jason D. Buenostro et al.

NATURE (2015)

Article Cell Biology

Obesity-dependent changes in interstitial ECM mechanics promote breast tumorigenesis

Bo Ri Seo et al.

SCIENCE TRANSLATIONAL MEDICINE (2015)

Review Biochemistry & Molecular Biology

Tissue Stiffness Dictates Development, Homeostasis, and Disease Progression

Andrew M. Handorf et al.

ORGANOGENESIS (2015)

Article Cell Biology

Epithelial-mesenchymal status influences how cells deposit fibrillin microfibrils

Andrew K. Baldwin et al.

JOURNAL OF CELL SCIENCE (2014)

Article Cell Biology

Isolated nuclei adapt to force and reveal a mechanotransduction pathway in the nucleus

Christophe Guilluy et al.

NATURE CELL BIOLOGY (2014)

Review Physiology

ACTIN DYNAMICS, ARCHITECTURE, AND MECHANICS IN CELL MOTILITY

Laurent Blanchoin et al.

PHYSIOLOGICAL REVIEWS (2014)

Review Biochemistry & Molecular Biology

Nesprins: from the nuclear envelope and beyond

Dipen Rajgor et al.

EXPERT REVIEWS IN MOLECULAR MEDICINE (2013)

Article Multidisciplinary Sciences

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

Takashi Nagano et al.

NATURE (2013)

Article Multidisciplinary Sciences

Lamin A/C and emerin regulate MKL1-SRF activity by modulating actin dynamics

Chin Yee Ho et al.

NATURE (2013)

Article Chemistry, Physical

Biophysical regulation of epigenetic state and cell reprogramming

Timothy L. Downing et al.

NATURE MATERIALS (2013)

Article Nanoscience & Nanotechnology

The nanomechanical signature of breast cancer

Marija Plodinec et al.

NATURE NANOTECHNOLOGY (2012)

Article Multidisciplinary Sciences

Cellular Traction Stresses Increase with Increasing Metastatic Potential

Casey M. Kraning-Rush et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Active maintenance of nuclear actin by importin 9 supports transcription

Joseph Dopie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Cancer Invasion and the Microenvironment: Plasticity and Reciprocity

Peter Friedl et al.

Article Multidisciplinary Sciences

Role of YAP/TAZ in mechanotransduction

Sirio Dupont et al.

NATURE (2011)

Review Cell Biology

Plasticity of cell migration: a multiscale tuning model

Peter Friedl et al.

JOURNAL OF CELL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Matrix Crosslinking Forces Tumor Progression by Enhancing Integrin Signaling

Kandice R. Levental et al.

Article Cell Biology

Demonstration of catch bonds between an integrin and its ligand

Fang Kong et al.

JOURNAL OF CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

The histone acetyltransferase PCAF associates with actin and hnRNP U for RNA polymerase II transcription

Ales Obrdlik et al.

MOLECULAR AND CELLULAR BIOLOGY (2008)

Article Multidisciplinary Sciences

Nuclear actin regulates dynamic subcellular localization and activity of the SRF cofactor MAL

Maria K. Vartiainen et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

Nuclear myosin VI enhances RNA polymerase II-dependent transcription

Sarah Vreugde et al.

MOLECULAR CELL (2006)

Article Biochemistry & Molecular Biology

Matrix elasticity directs stem cell lineage specification

Adam J. Engler et al.

Article Oncology

Tensional homeostasis and the malignant phenotype

MJ Paszek et al.

CANCER CELL (2005)

Article Biochemistry & Molecular Biology

Actin and hnRNP U cooperate for productive transcription by RNA polymerase II

A Kukalev et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Exportin 6:: a novel nuclear export receptor that is specific for profilin•actin complexes

T Stüven et al.

EMBO JOURNAL (2003)

Article Biophysics

Cell movement is guided by the rigidity of the substrate

CM Lo et al.

BIOPHYSICAL JOURNAL (2000)