相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Miniaturization, Genome Size, and Biological Size in a Diverse Clade of Salamanders
Louis Paul Decena-Segarra et al.
AMERICAN NATURALIST (2020)
The whale shark genome reveals how genomic and physiological properties scale with body size
Jessica A. Weber et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2020)
Genome size evolution: towards new model systems for old questions
Julie Blommaert
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2020)
Genome streamlining in a minute herbivore that manipulates its host plant
Robert Greenhalgh et al.
ELIFE (2020)
Opportunities and challenges in long-read sequencing data analysis
Shanika L. Amarasinghe et al.
GENOME BIOLOGY (2020)
Genome of Spea multiplicata, a Rapidly Developing, Phenotypically Plastic, and Desert-Adapted Spadefoot Toad
Fabian Seidl et al.
G3-GENES GENOMES GENETICS (2019)
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Robert M. Waterhouse et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Divergent Evolutionary Trajectories of Two Young, Homomorphic, and Closely Related Sex Chromosome Systems
Benjamin L. S. Furman et al.
GENOME BIOLOGY AND EVOLUTION (2018)
The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes
Martin Malmstrom et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Squamate reptiles challenge paradigms of genomic repeat element evolution set by birds and mammals
Giulia I. M. Pasquesi et al.
NATURE COMMUNICATIONS (2018)
Genome Size Diversity and Its Impact on the Evolution of Land Plants
Jaume Pellicer et al.
GENES (2018)
Tissue Specificity and Dynamics of Sex-Biased Gene Expression in a Common Frog Population with Differentiated, Yet Homomorphic, Sex Chromosomes
Wen-Juan Ma et al.
GENES (2018)
Anti-Milllerian Hormone and Testicular Function in Prepubertal Boys With Cryptorchidism
Romina P. Grinspon et al.
FRONTIERS IN ENDOCRINOLOGY (2018)
piRNAs and PIWI proteins: regulators of gene expression in development and stem
Patricia Rojas-Rios et al.
DEVELOPMENT (2018)
The axolotl genome and the evolution of key tissue formation regulators
Sergej Nowoshilow et al.
NATURE (2018)
Macroevolutionary shift in the size of amphibian genomes and the role of life history and climate
H. Christoph Liedtke et al.
NATURE ECOLOGY & EVOLUTION (2018)
A rapid rate of sex-chromosome turnover and non-random transitions in true frogs
Daniel L. Jeffries et al.
NATURE COMMUNICATIONS (2018)
Characterization of Sexual Trait Development in cyp17a1-Deficient Zebrafish
Gang Zhai et al.
ENDOCRINOLOGY (2018)
Evolutionary and developmental dynamics of sex-biased gene expression in common frogs with proto-Y chromosomes
Wen-Juan Ma et al.
GENOME BIOLOGY (2018)
Regulatory activities of transposable elements: from conflicts to benefits
Edward B. Chuong et al.
NATURE REVIEWS GENETICS (2017)
piRNAs and Evolutionary Trajectories in Genome Size and Content
Rachel Lockridge Mueller
JOURNAL OF MOLECULAR EVOLUTION (2017)
Differential analysis of RNA-seq incorporating quantification uncertainty
Harold Pimentel et al.
NATURE METHODS (2017)
Dynamics of genome size evolution in birds and mammals
Aurelie Kapusta et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Sex Determination and Sex Chromosomes in Amphibia
Ikuo Miura
SEXUAL DEVELOPMENT (2017)
Analytical Biases Associated with GC-Content in Molecular Evolution
Jonathan Romiguier et al.
FRONTIERS IN GENETICS (2017)
The transcriptional architecture of phenotypic dimorphism
Judith E. Mank
NATURE ECOLOGY & EVOLUTION (2017)
Phylotranscriptomic consolidation of the jawed vertebrate timetree
Iker Irisarri et al.
NATURE ECOLOGY & EVOLUTION (2017)
GenomeScope: fast reference-free genome profiling from short reads
Gregory W. Vurture et al.
BIOINFORMATICS (2017)
Database resources of the National Center for Biotechnology Information
Richa Agarwala et al.
NUCLEIC ACIDS RESEARCH (2016)
Sex-Biased Gene Expression
Sonja Grath et al.
ANNUAL REVIEW OF GENETICS, VOL 50 (2016)
Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch
Yanzhu Ji et al.
JOURNAL OF MOLECULAR EVOLUTION (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Transposons, Genome Size, and Evolutionary Insights in Animals
Adriana Canapa et al.
CYTOGENETIC AND GENOME RESEARCH (2015)
De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti)
Clement Goubert et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Low Levels of LTR Retrotransposon Deletion by Ectopic Recombination in the Gigantic Genomes of Salamanders
Matthew Blake Frahry et al.
JOURNAL OF MOLECULAR EVOLUTION (2015)
Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
Martin D. Smith et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
Yan-Bo Sun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Repbase Update, a database of repetitive elements in eukaryotic genomes
Weidong Bao et al.
MOBILE DNA (2015)
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
David M. Emms et al.
GENOME BIOLOGY (2015)
Variation in piRNA and Transposable Element Content in Strains of Drosophila melanogaster
Jimin Song et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Hellbender Genome Sequences Shed Light on Genomic Expansion at the Base of Crown Salamanders
Cheng Sun et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Metabolic 'engines' of flight drive genome size reduction in birds
Natalie A. Wright et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2014)
The capacity of target silencing by Drosophila PIWI and piRNAs
Christina Post et al.
RNA (2014)
Compact genome of the Antarctic midge is likely an adaptation to an extreme environment
Joanna L. Kelley et al.
NATURE COMMUNICATIONS (2014)
GENEIOUS! SIMPLIFIED GENOME SKIMMING METHODS FOR PHYLOGENETIC SYSTEMATIC STUDIES: A CASE STUDY IN OREOCARYA (BORAGINACEAE)
Lee A. Ripma et al.
APPLICATIONS IN PLANT SCIENCES (2014)
The Norway spruce genome sequence and conifer genome evolution
Bjorn Nystedt et al.
NATURE (2013)
Architecture and evolution of a minute plant genome
Enrique Ibarra-Laclette et al.
NATURE (2013)
The Roles of Fibroblast Growth Factors in the Testicular Development and Tumor
Xin Jiang et al.
JOURNAL OF DIABETES RESEARCH (2013)
LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders
Cheng Sun et al.
GENOME BIOLOGY AND EVOLUTION (2012)
The Evolution of Intron Size in Amniotes: A Role for Powered Flight?
Qu Zhang et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Slow DNA Loss in the Gigantic Genomes of Salamanders
Cheng Sun et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Hi-C: A comprehensive technique to capture the conformation of genomes
Jon-Matthew Belton et al.
METHODS (2012)
Recombination Drives Vertebrate Genome Contraction
Kiwoong Nam et al.
PLOS GENETICS (2012)
Transitions Between Sex-Determining Systems in Reptiles and Amphibians
Stephen D. Sarre et al.
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 12 (2011)
A Bayesian model for gene family evolution
Liang Liu et al.
BMC BIOINFORMATICS (2011)
Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota
Margaret Byrne et al.
JOURNAL OF BIOGEOGRAPHY (2011)
The genome of the green anole lizard and a comparative analysis with birds and mammals
Jessica Alfoeldi et al.
NATURE (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Genome Size and Species Diversification
Ken Kraaijeveld
EVOLUTIONARY BIOLOGY (2010)
A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution
Christian Biemont
GENETICS (2010)
Relationship Between Genome Size and Organismal Complexity in the Lineage Leading from Prokaryotes to Mammals
A. V. Markov et al.
PALEONTOLOGICAL JOURNAL (2010)
The Genome of the Western Clawed Frog Xenopus tropicalis
Uffe Hellsten et al.
SCIENCE (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Deletional Bias across the Three Domains of Life
Chih-Horng Kuo et al.
GENOME BIOLOGY AND EVOLUTION (2009)
Ploidy and the Causes of Genomic Evolution
Aleeza C. Gerstein et al.
JOURNAL OF HEREDITY (2009)
The Genetic Signatures of Noncoding RNAs
John S. Mattick
PLOS GENETICS (2009)
Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders
Rachel Lockridge Mueller et al.
ZOOLOGY (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)
Serine proteases and serine protease inhibitors in testicular physiology: the plasminogen activation system
Brigitte Le Magueresse-Battistoni
REPRODUCTION (2007)
Origin of avian genome size and structure in non-avian dinosaurs
Chris L. Organ et al.
NATURE (2007)
The evolution of sex-biased genes and sex-biased gene expression
Hans Ellegren et al.
NATURE REVIEWS GENETICS (2007)
Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
LN van de Lagemaat et al.
GENOME RESEARCH (2005)
The relationship between genome size, development rate, and body size in copepods
GA Wyngaard et al.
HYDROBIOLOGIA (2005)
RNA regulation: a new genetics?
JS Mattick
NATURE REVIEWS GENETICS (2004)
Mobile elements: Drivers of genome evolution
HH Kazazian
SCIENCE (2004)
Insertion-deletion biases and the evolution of genome size
TR Gregory
GENE (2004)
Genome size evolution in pufferfish: A comparative analysis of diodontid and tetraodontid pufferfish genomes
DE Neafsey et al.
GENOME RESEARCH (2003)
Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs
E Waltari et al.
AMERICAN NATURALIST (2002)
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
KM Devos et al.
GENOME RESEARCH (2002)
Mutational equilibrium model of genome size evolution
DA Petrov
THEORETICAL POPULATION BIOLOGY (2002)
Mechanisms and rates of genome expansion and contraction in flowering plants
JL Bennetzen
GENETICA (2002)
Transposable elements and the evolution of genome size in eukaryotes
MG Kidwell
GENETICA (2002)
Local rates of recombination are positively correlated with GC content in the human genome
SM Fullerton et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma
TR Gregory
BIOLOGICAL REVIEWS (2001)
Fugu: a compact vertebrate reference genome
B Venkatesh et al.
FEBS LETTERS (2000)