相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Accurate Inference of Tree Topologies from Multiple Sequence Alignments Using Deep Learning
Anton Suvorov et al.
SYSTEMATIC BIOLOGY (2020)
Process-based species delimitation leads to identification of more biologically relevant species
Megan L. Smith et al.
EVOLUTION (2020)
Identifying and Interpreting Apparent Neanderthal Ancestry in African Individuals
Lu Chen et al.
CELL (2020)
Predicting the Landscape of Recombination Using Deep Learning
Jeffrey R. Adrion et al.
MOLECULAR BIOLOGY AND EVOLUTION (2020)
Selective sweeps on novel and introgressed variation shape mimicry loci in a butterfly adaptive radiation
Markus Moest et al.
PLOS BIOLOGY (2020)
Efficiently Summarizing Relationships in Large Samples: A General Duality Between Statistics of Genealogies and Genomes
Peter Ralph et al.
GENETICS (2020)
Divergence-Based Introgression Polarization
Evan S. Forsythe et al.
GENOME BIOLOGY AND EVOLUTION (2020)
Assessing biological factors affecting postspeciation introgression
Jennafer A. P. Hamlin et al.
EVOLUTION LETTERS (2020)
Opportunities and challenges in long-read sequencing data analysis
Shanika L. Amarasinghe et al.
GENOME BIOLOGY (2020)
Recombination rate variation shapes barriers to introgression across butterfly genomes
Simon H. Martin et al.
PLOS BIOLOGY (2019)
An invariants-based method for efficient identification of hybrid species from large-scale genomic data
Laura S. Kubatko et al.
BMC EVOLUTIONARY BIOLOGY (2019)
A Three-Sample Test for Introgression
Matthew W. Hahn et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Inferring whole-genome histories in large population datasets
Jerome Kelleher et al.
NATURE GENETICS (2019)
A method for genome-wide genealogy estimation for thousands of samples
Leo Speidel et al.
NATURE GENETICS (2019)
Genomic architecture and introgression shape a butterfly radiation
Nathaniel B. Edelman et al.
SCIENCE (2019)
The Timing and Direction of Introgression Under the Multispecies Network Coalescent
Mark S. Hibbins et al.
GENETICS (2019)
The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference
Lex Flagel et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
SLiM 3: Forward Genetic Simulations Beyond the Wright-Fisher Model
Benjamin C. Haller et al.
MOLECULAR BIOLOGY AND EVOLUTION (2019)
Approximate Bayesian computation with deep learning supports a third archaic introgression in Asia and Oceania
Mayukh Mondal et al.
NATURE COMMUNICATIONS (2019)
HyDe: A Python Package for Genome-Scale Hybridization Detection
Paul D. Blischak et al.
SYSTEMATIC BIOLOGY (2018)
Supervised Machine Learning for Population Genetics: A New Paradigm
Daniel R. Schrider et al.
TRENDS IN GENETICS (2018)
A universal SNP and small-indel variant caller using deep neural networks
Ryan Poplin et al.
NATURE BIOTECHNOLOGY (2018)
Efficient pedigree recording for fast population genetics simulation
Jerome Kelleher et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Robust and scalable inference of population history froth hundreds of unphased whole genomes
Jonathan Terhorst et al.
NATURE GENETICS (2017)
Demographic model selection using random forests and the site frequency spectrum
Megan L. Smith et al.
MOLECULAR ECOLOGY (2017)
No evidence for maintenance of a sympatric Heliconius species barrier by chromosomal inversions
John W. Davey et al.
EVOLUTION LETTERS (2017)
Reliable ABC model choice via random forests
Pierre Pudlo et al.
BIOINFORMATICS (2016)
The Genetic Cost of Neanderthal Introgression
Kelley Harris et al.
GENETICS (2016)
Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes
Jerome Kelleher et al.
PLOS COMPUTATIONAL BIOLOGY (2016)
The Strength of Selection against Neanderthal Introgression
Ivan Juric et al.
PLOS GENETICS (2016)
The Genetic Cost of Neanderthal Introgression
Kelley Harris et al.
GENETICS (2016)
Detection and Polarization of Introgression in a Five-Taxon Phylogeny
James B. Pease et al.
SYSTEMATIC BIOLOGY (2015)
Inferring human population size and separation history from multiple genome sequences
Stephan Schiffels et al.
NATURE GENETICS (2014)
An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes
Kevin J. Liu et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
Simon H. Martin et al.
GENOME RESEARCH (2013)
Genome-wide patterns of divergence and gene flow across a butterfly radiation
Nicola J. Nadeau et al.
MOLECULAR ECOLOGY (2013)
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
Deren A. R. Eaton et al.
SYSTEMATIC BIOLOGY (2013)
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Kanchon K. Dasmahapatra et al.
NATURE (2012)
A New Isolation with Migration Model along Complete Genomes Infers Very Different Divergence Processes among Closely Related Great Ape Species
Thomas Mailund et al.
PLOS GENETICS (2012)
The NumPy Array: A Structure for Efficient Numerical Computation
Stefan van der Walt et al.
COMPUTING IN SCIENCE & ENGINEERING (2011)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Inference of human population history from individual whole-genome sequences
Heng Li et al.
NATURE (2011)
Approximate Bayesian Computation in Evolution and Ecology
Mark A. Beaumont
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 41 (2010)
A Draft Sequence of the Neandertal Genome
Richard E. Green et al.
SCIENCE (2010)
A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
Simon Joly et al.
AMERICAN NATURALIST (2009)
STEM: species tree estimation using maximum likelihood for gene trees under coalescence
Laura S. Kubatko et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach
Julien Y. Dutheil et al.
GENETICS (2009)
Identifying Hybridization Events in the Presence of Coalescence via Model Selection
Laura Salter Kubatko
SYSTEMATIC BIOLOGY (2009)
Building Predictive Models in R Using the caret Package
Max Kuhn
JOURNAL OF STATISTICAL SOFTWARE (2008)
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
Asger Hobolth et al.
PLOS GENETICS (2007)
Automated binning of microsatellite alleles: problems and solutions
W. Amos et al.
MOLECULAR ECOLOGY NOTES (2007)
Refugia, differentiation and postglacial migration in arctic-alpine Eurasia, exemplified by the mountain avens (Dryas octopetala L.)
Inger Skrede et al.
MOLECULAR ECOLOGY (2006)
Approximating the coalescent with recombination
GAT McVean et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2005)
分享论文
