Excited state dynamics of 7-deazaguanosine and guanosine 5 '-monophosphate

Minor structural modifications to the DNA and RNA nucleobases have a significant effect on their excited state dynamics and electronic relaxation pathways. In this study, the excited state dynamics of 7-deazaguanosine and guanosine 5 ' -monophosphate are investigated in aqueous solution and in a mixture of methanol and water using femtosecond broadband transient absorption spectroscopy following excitation at 267 nm. The transient spectra are collected using photon densities that ensure no parasitic multiphoton-induced signal from solvated electrons. The data can be fit satisfactorily using a two- or three-component kinetic model. By analyzing the results from steady-state, time-resolved, computational calculations, and the methanol-water mixture, the following general relaxation mechanism is proposed for both molecules, L-b -> L-a -> (1)pi sigma (*)(ICT) -> S-0, where the (1)pi sigma (*)(ICT) stands for an intramolecular charge transfer excited singlet state with significant pi sigma (*) character. In general, longer lifetimes for internal conversion are obtained for 7-deazaguanosine compared to guanosine 5 ' -monophosphate. Internal conversion of the (1)pi sigma (*)(ICT) state to the ground state occurs on a similar time scale of a few picoseconds in both molecules. Collectively, the results demonstrate that substitution of a single nitrogen atom for a methine (C-H) group at position seven of the guanine moiety stabilizes the (1)pi pi (*) L-b and L-a states and alters the topology of their potential energy surfaces in such a way that the relaxation dynamics in 7-deazaguanosine are slowed down compared to those in guanosine 5 ' -monophosphate but not for the internal conversion of (1)pi sigma (*)(ICT) state to the ground state.

Automated summary

Minor structural modifications to DNA and RNA nucleobases have a significant effect on their excited state dynamics, with 7-deazaguanosine showing longer internal conversion lifetimes compared to guanosine 5'-monophosphate. The general relaxation mechanism proposed in this study suggests that the substitution of a single nitrogen atom for a methine group at position seven of the guanine moiety alters the relaxation dynamics in 7-deazaguanosine compared to guanosine 5'-monophosphate.