相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Clostridioides difficile Whole-genome Sequencing Differentiates Relapse With the Same Strain From Reinfection With a New Strain
Janice Cho et al.
CLINICAL INFECTIOUS DISEASES (2021)
Plasmid-mediated metronidazole resistance in Clostridioides difficile
Ilse M. Boekhoud et al.
NATURE COMMUNICATIONS (2020)
Assembly of long, error-prone reads using repeat graphs
Mikhail Kolmogorov et al.
NATURE BIOTECHNOLOGY (2019)
Increasing antibiotic resistance in Clostridioides difficile: A systematic review and meta-analysis
Srishti Saha et al.
ANAEROBE (2019)
Minimap2: pairwise alignment for nucleotide sequences
Heng Li
BIOINFORMATICS (2018)
Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Genome-Wide Typing of Clostridium difficile
Stefan Bletz et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2018)
Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea
Eric J. Battaglioli et al.
SCIENCE TRANSLATIONAL MEDICINE (2018)
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
Ryan R. Wick et al.
PLOS COMPUTATIONAL BIOLOGY (2017)
Antimicrobial susceptibility of Clostridium difficile isolates in Israel
Linda Tkhawkho et al.
JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2017)
Atropos: specific, sensitive, and speedy trimming of sequencing reads
John P. Didion et al.
PEERJ (2017)
Changes in microbial ecology after fecal microbiota transplantation for recurrent C-difficile infection affected by underlying inflammatory bowel disease
Sahil Khanna et al.
MICROBIOME (2017)
Treatment of pediatric Clostridium difficile infection: a review on treatment efficacy and economic valuee
Amanda R. D'Ostroph et al.
INFECTION AND DRUG RESISTANCE (2017)
Antimicrobial susceptibility of Brazilian Clostridium difficile strains determined by agar dilution and disk diffusion
Edmir Geraldo Fraga et al.
BRAZILIAN JOURNAL OF INFECTIOUS DISEASES (2016)
Oxford Nanopore MinION Sequencing and Genome Assembly
Hengyun Lu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
A national survey of the molecular epidemiology of Clostridium difficile in Israel: the dissemination of the ribotype 027 strain with reduced susceptibility to vancomycin and metronidazole
Amos Adler et al.
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2015)
HTSeq-a Python framework to work with high-throughput sequencing data
Simon Anders et al.
BIOINFORMATICS (2015)
Gut Microbiota-Produced Succinate Promotes C-difficile Infection after Antibiotic Treatment or Motility Disturbance
Jessica A. Ferreyra et al.
CELL HOST & MICROBE (2014)
Clinical and Molecular Characteristics of an Outbreak Caused by the Pandemic (BI/NAP1/027) Clostridium difficile Clone in a Single Center in Israel
Yonit Wiener-Well et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
The human microbiome is a source of therapeutic drug targets
Bret D. Wallace et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2013)
Updating benchtop sequencing performance comparison
Sebastian Juenemann et al.
NATURE BIOTECHNOLOGY (2013)
Differential Stress Transcriptome Landscape of Historic and Recently Emerged Hypervirulent Strains of Clostridium difficile Strains Determined Using RNA-seq
Joy Scaria et al.
PLOS ONE (2013)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Faecal pharmacokinetics of orally administered vancomycin in patients with suspected Clostridium difficile infection
Milagros Gonzales et al.
BMC INFECTIOUS DISEASES (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Comparison of real-time PCR for detection of the tcdC gene with four toxin immunoassays and culture in diagnosis of Clostridium difficile infection
Lynne M. Sloan et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2008)