4.8 Editorial Material

Plasmid Acquisition Alters Vancomycin Susceptibility in Clostridioides difficile

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Immunology

Clostridioides difficile Whole-genome Sequencing Differentiates Relapse With the Same Strain From Reinfection With a New Strain

Janice Cho et al.

Summary: Through WGS analysis of C. difficile isolates from CDI patients, it was found that 40% of community-acquired CDI patients may have transmission within the same zip code. WGS better differentiates between relapse and reinfection than definitions based on the timing of recurrence.

CLINICAL INFECTIOUS DISEASES (2021)

Article Multidisciplinary Sciences

Plasmid-mediated metronidazole resistance in Clostridioides difficile

Ilse M. Boekhoud et al.

NATURE COMMUNICATIONS (2020)

Article Biotechnology & Applied Microbiology

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov et al.

NATURE BIOTECHNOLOGY (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biochemical Research Methods

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

Ryan R. Wick et al.

PLOS COMPUTATIONAL BIOLOGY (2017)

Article Infectious Diseases

Antimicrobial susceptibility of Clostridium difficile isolates in Israel

Linda Tkhawkho et al.

JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE (2017)

Article Multidisciplinary Sciences

Atropos: specific, sensitive, and speedy trimming of sequencing reads

John P. Didion et al.

Review Infectious Diseases

Treatment of pediatric Clostridium difficile infection: a review on treatment efficacy and economic valuee

Amanda R. D'Ostroph et al.

INFECTION AND DRUG RESISTANCE (2017)

Article Infectious Diseases

Antimicrobial susceptibility of Brazilian Clostridium difficile strains determined by agar dilution and disk diffusion

Edmir Geraldo Fraga et al.

BRAZILIAN JOURNAL OF INFECTIOUS DISEASES (2016)

Review Genetics & Heredity

Oxford Nanopore MinION Sequencing and Genome Assembly

Hengyun Lu et al.

GENOMICS PROTEOMICS & BIOINFORMATICS (2016)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Editorial Material Public, Environmental & Occupational Health

Clinical and Molecular Characteristics of an Outbreak Caused by the Pandemic (BI/NAP1/027) Clostridium difficile Clone in a Single Center in Israel

Yonit Wiener-Well et al.

INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Review Biochemistry & Molecular Biology

The human microbiome is a source of therapeutic drug targets

Bret D. Wallace et al.

CURRENT OPINION IN CHEMICAL BIOLOGY (2013)

Letter Biotechnology & Applied Microbiology

Updating benchtop sequencing performance comparison

Sebastian Juenemann et al.

NATURE BIOTECHNOLOGY (2013)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)