4.7 Review

The microbial dimension of submarine groundwater discharge: current challenges and future directions

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Groundwater discharge impacts marine isotope budgets of Li, Mg, Ca, Sr, and Ba

Kimberley K. Mayfield et al.

Summary: Groundwater-derived solute fluxes have traditionally been considered less important than riverine fluxes in marine isotope budgets, however, this study shows that they play a significant role in mediating the magnitude and isotopic composition of terrestrially derived solute fluxes to the ocean. The isotopic compositions of groundwater-derived solutes differ from global riverine averages, a factor that should be prioritized in Earth-system models.

NATURE COMMUNICATIONS (2021)

Article Microbiology

Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems

Christine He et al.

Summary: The study reveals the influence of groundwater geochemistry on the distribution and abundance of CPR bacteria and DPANN archaea; significant species-level differences exist among CPR and DPANN communities across different groundwater sites; cryogenic transmission electron microscopy imaging and genomic analyses are useful in studying the species and growth patterns of these microbes.

NATURE MICROBIOLOGY (2021)

Article Environmental Sciences

Bacterial community variations with salinity in the saltwater-intruded estuarine aquifer

Xiaoying Zhang et al.

Summary: This study examines the responses of bacterial populations in a coastal Holocene groundwater system to salinity and other environmental factors (EFs), finding that bacterial diversity is independent of salinity, while no significant increase or decrease in abundant bacterial relative abundance is observed with salinity changes. However, rare taxa exhibit growth with salinity, correlating significantly with sulfate concentration. The study suggests that the spatial organization of microbial communities is complex and influenced by multiple factors on a regional scale.

SCIENCE OF THE TOTAL ENVIRONMENT (2021)

Article Engineering, Environmental

Aquifer recharge viewed through the lens of microbial community ecology: Initial disturbance response, and impacts of species sorting versus mass effects on microbial community assembly in groundwater during riverbank filtration

Lucas Fillinger et al.

Summary: Riverbank filtration plays a crucial role in balancing groundwater demands and securing drinking water supplies. This study investigated the impact of riverbank filtration on microbial communities in a shallow porous aquifer, revealing significant changes in community composition in response to surface water intrusion. Despite some river-derived taxa entering the aquifer, the overall influence on microbial community composition was outweighed by environmental changes caused by infiltrating river water.

WATER RESEARCH (2021)

Review Biochemistry & Molecular Biology

Groundwater Microbial Communities in Times of Climate Change

Alice Retter et al.

Summary: Climate change has a significant impact on the global water cycle, especially on subsurface ecosystems. Increasing temperatures and extreme hydrological events are causing serious consequences for groundwater systems, with extended droughts and heavy rains affecting water quality and availability. The interplay of biotic and abiotic drivers in subterranean ecosystems, particularly the role of microbes, is crucial for understanding the potential threats posed by climate change on groundwater resources and habitats.

CURRENT ISSUES IN MOLECULAR BIOLOGY (2021)

Article Environmental Sciences

Interrelation prokaryotic community-aquifer in a carbonate coastal environment

Fernando Sola et al.

AQUATIC SCIENCES (2020)

Editorial Material Environmental Sciences

The Subterranean Estuary: Technical Term, Simple Analogy, or Source of Confusion?

Carlos Duque et al.

WATER RESOURCES RESEARCH (2020)

Article Multidisciplinary Sciences

Fresh groundwater discharge insignificant for the world's oceans but important for coastal ecosystems

Elco Luijendijk et al.

NATURE COMMUNICATIONS (2020)

Article Environmental Sciences

Organic carbon in a seepage face of a subterranean estuary: Turnover and microbial interrelations

Shan Jiang et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2020)

Article Environmental Sciences

Comparison of the groundwater microbial community in a salt-freshwater mixing zone during the dry and wet seasons

Lin Chen et al.

JOURNAL OF ENVIRONMENTAL MANAGEMENT (2020)

Article Environmental Sciences

Use of bacteria community analysis to distinguish groundwater recharge sources to shallow wells

Mark A. Higgins et al.

JOURNAL OF ENVIRONMENTAL QUALITY (2020)

Article Microbiology

Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN

Jacob P. Beam et al.

FRONTIERS IN MICROBIOLOGY (2020)

Proceedings Paper Biodiversity Conservation

Investigating the Land-Sea Transition Zone

Stephan Ludger Seibert et al.

YOUMARES 9 - THE OCEANS: OUR RESEARCH, OUR FUTURE (2020)

Review Biotechnology & Applied Microbiology

Size Matters: Ultra-small and Filterable Microorganisms in the Environment

Ryosuke Nakai

MICROBES AND ENVIRONMENTS (2020)

Article Environmental Sciences

Bacterial-derived nutrient and carbon source-sink behaviors in a sandy beach subterranean estuary

Xiaogang Chen et al.

MARINE POLLUTION BULLETIN (2020)

Article Limnology

Sources and sinks of CO2 and CH4 in siliciclastic subterranean estuaries

Andrea J. Pain et al.

LIMNOLOGY AND OCEANOGRAPHY (2019)

Article Multidisciplinary Sciences

Microbial dormancy in the marine subsurface: Global endospore abundance and response to burial

Lars Woermer et al.

SCIENCE ADVANCES (2019)

Article Geosciences, Multidisciplinary

Integrating Aquatic and Terrestrial Perspectives to Improve Insights Into Organic Matter Cycling at the Landscape Scale

Zachary E. Kayler et al.

FRONTIERS IN EARTH SCIENCE (2019)

Article Environmental Sciences

The endolithic bacterial diversity of shallow bedrock ecosystems

Cassandre Sara Lazar et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Article Environmental Sciences

Characterizing microbial diversity and community composition of groundwater in a salt-freshwater transition zone

Lin Chen et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Article Biology

Visualization is crucial for understanding microbial processes in the ocean

Marta Sebastian et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2019)

Article Environmental Sciences

Microbial community structure associated with submarine groundwater discharge in northern Java (Indonesia)

Dini Adyasari et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2019)

Article Biochemistry & Molecular Biology

Host-associated microbiomes drive structure and function of marine ecosystems

Laetitia G. E. Wilkins et al.

PLOS BIOLOGY (2019)

Review Environmental Sciences

Factors influencing aquatic and terrestrial bacterial community assembly

Silke Langenheder et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2019)

Review Environmental Sciences

Submarine Groundwater Discharge: Updates on Its Measurement Techniques, Geophysical Drivers, Magnitudes, and Effects

Makoto Taniguchi et al.

FRONTIERS IN ENVIRONMENTAL SCIENCE (2019)

Article Environmental Sciences

DSi as a Tracer for Submarine Groundwater Discharge

Till Oehler et al.

FRONTIERS IN MARINE SCIENCE (2019)

Article Microbiology

Tracking active groundwater microbes with D2O labelling to understand their ecosystem function

Martin Taubert et al.

ENVIRONMENTAL MICROBIOLOGY (2018)

Article Environmental Sciences

Aquifer Discharge Drives Microbial Community Change in Karst Estuaries

Damian M. Menning et al.

ESTUARIES AND COASTS (2018)

Article Microbiology

How, When, and Where Relic DNA Affects Microbial Diversity

J. T. Lennon et al.

Article Multidisciplinary Sciences

Radium tracing nutrient inputs through submarine groundwater discharge in the global ocean

Hyung-Mi Cho et al.

SCIENTIFIC REPORTS (2018)

Article Microbiology

Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat

Sebastian Haas et al.

FRONTIERS IN MICROBIOLOGY (2018)

Review Geosciences, Multidisciplinary

The biomass and biodiversity of the continental subsurface

C. Magnabosco et al.

NATURE GEOSCIENCE (2018)

Review Microbiology

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

Cindy J. Castelle et al.

NATURE REVIEWS MICROBIOLOGY (2018)

Article Microbiology

Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater

Emma Bell et al.

FRONTIERS IN MICROBIOLOGY (2018)

Article Environmental Sciences

Hydrologic Controls of Methane Dynamics in Karst Subterranean Estuaries

D. Brankovits et al.

GLOBAL BIOGEOCHEMICAL CYCLES (2018)

Article Biotechnology & Applied Microbiology

Significant microbial nitrogen loss from denitrification and anammox in the land-sea interface of low permeable sediments

Lijing Jiao et al.

INTERNATIONAL BIODETERIORATION & BIODEGRADATION (2018)

Review Water Resources

Synthesizing the Effects of Submarine Groundwater Discharge on Marine Biota

Alanna L. Lecher et al.

HYDROLOGY (2018)

Article Biotechnology & Applied Microbiology

Benzene Degradation by a Variovorax Species within a Coal Tar-Contaminated Groundwater Microbial Community

Kevin M. Posman et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)

Article Microbiology

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

Paul Carini et al.

NATURE MICROBIOLOGY (2017)

Article Microbiology

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes

Emily B. Graham et al.

ENVIRONMENTAL MICROBIOLOGY (2017)

Article Geochemistry & Geophysics

Using the radium quartet to quantify submarine groundwater discharge and porewater exchange

Valenti Rodellas et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2017)

Article Microbiology

Microbial communities in carbonate rocksfrom soil via groundwater to rocks

Aileen Meier et al.

JOURNAL OF BASIC MICROBIOLOGY (2017)

Review Limnology

Headwaters to oceans: Ecological and biogeochemical contrasts across the aquatic continuum

Marguerite A. Xenopoulos et al.

LIMNOLOGY AND OCEANOGRAPHY (2017)

Article Chemistry, Multidisciplinary

Cycling of redox-sensitive elements in a sandy subterranean estuary of the southern North Sea

Anja Reckhardt et al.

MARINE CHEMISTRY (2017)

Article Environmental Sciences

Towards an integrated understanding of how micro scale processes shape groundwater ecosystem functions

Susanne I. Schmidt et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2017)

Article Microbiology

Archaeal Diversity and CO2 Fixers in Carbonate-/Siliciclastic-Rock Groundwater Ecosystems

Cassandre Sara Lazar et al.

ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2017)

Article Microbiology

Reactivation of Deep Subsurface Microbial Community in Response to Methane or Methanol Amendment

Pauliina Rajala et al.

FRONTIERS IN MICROBIOLOGY (2017)

Article Environmental Sciences

Transport of enterococci and F plus coliphage through the saturated zone of the beach aquifer

Nicholas R. de Sieyes et al.

JOURNAL OF WATER AND HEALTH (2016)

Article Geosciences, Multidisciplinary

The global volume and distribution of modern groundwater

Tom Gleeson et al.

NATURE GEOSCIENCE (2016)

Article Water Resources

Transport and transformations of groundwater-borne carbon discharging through a sandy beach to a coastal ocean

Gwenaelle Chaillou et al.

CANADIAN WATER RESOURCES JOURNAL (2016)

Article Geochemistry & Geophysics

Methanotrophy controls groundwater methane export from a barrier island

Charles A. Schutte et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2016)

Article Chemistry, Multidisciplinary

Microtidal subterranean estuaries as a source of fresh terrestrial dissolved organic matter to the coastal ocean

Mathilde Couturier et al.

MARINE CHEMISTRY (2016)

Article Multidisciplinary Sciences

An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers

Maggie C. Y. Lau et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Environmental Sciences

Remnants of marine bacterial communities can be retrieved from deep sediments in lakes of marine origin

Silke Langenheder et al.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2016)

Article Microbiology

Status of the Archaeal and Bacterial Census: an Update

Patrick D. Schloss et al.

Article Multidisciplinary Sciences

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

Karthik Anantharaman et al.

NATURE COMMUNICATIONS (2016)

Article Multidisciplinary Sciences

Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

James C. Stegen et al.

NATURE COMMUNICATIONS (2016)

Article Microbiology

Bacterial Diversity in Submarine Groundwater along the Coasts of the Yellow Sea

Qi Ye et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Microbiology

Bacterial Dormancy Is More Prevalent in Freshwater than Hypersaline Lakes

Zachary T. Aanderud et al.

FRONTIERS IN MICROBIOLOGY (2016)

Article Engineering, Environmental

Nutrient Loading through Submarine Groundwater Discharge and Phytoplankton Growth in Monterey Bay, CA

Alanna L. Lecher et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)

Article Engineering, Environmental

Biodegradation: Updating the Concepts of Control for Microbial Cleanup in Contaminated Aquifers

Rainer U. Meckenstock et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)

Article Multidisciplinary Sciences

Unusual biology across a group comprising more than 15% of domain Bacteria

Christopher T. Brown et al.

NATURE (2015)

Article Oceanography

Analysis and trends of the world's coastal cities and agglomerations

Juan Manuel Barragan et al.

OCEAN & COASTAL MANAGEMENT (2015)

Article Multidisciplinary Sciences

Submarine groundwater discharge as a major source of nutrients to the Mediterranean Sea

Valenti Rodellas et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Multidisciplinary Sciences

Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez et al.

SCIENCE (2015)

Article Environmental Sciences

Influence of seawater intrusion on microbial communities in groundwater

Tatsuya Unno et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2015)

Article Multidisciplinary Sciences

Diverse uncultivated ultra-small bacterial cells in groundwater

Birgit Luef et al.

NATURE COMMUNICATIONS (2015)

Article Ecology

Groundwater ecosystem services: a review

Christian Griebler et al.

FRESHWATER SCIENCE (2015)

Article Ecology

Groundwater ecosystem services: a review

Christian Griebler et al.

FRESHWATER SCIENCE (2015)

Article Microbiology

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

William C. Nelson et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Microbiology

Resuscitation of the rare boisphere contributes to pulses of ecosystem activity

Zachary T. Aanderud et al.

FRONTIERS IN MICROBIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Diversity and Transport of Microorganisms in Intertidal Sands of the California Coast

Alexandria B. Boehm et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)

Review Biochemical Research Methods

Current developments in groundwater ecology - from biodiversity to ecosystem function and services

Christian Griebler et al.

CURRENT OPINION IN BIOTECHNOLOGY (2014)

Article Microbiology

Biogeography of planktonic and benthic cyanobacteria in coastal waters of the Big Island, Hawai'i

Samuel D. Chamberlain et al.

FEMS MICROBIOLOGY ECOLOGY (2014)

Review Microbiology

Factors affecting virus dynamics and microbial host-virus interactions in marine environments

Kristina D. A. Mojica et al.

FEMS MICROBIOLOGY ECOLOGY (2014)

Article Geochemistry & Geophysics

Trace element geochemistry of groundwater in a karst subterranean estuary (Yucatan Peninsula, Mexico)

Meagan Eagle Gonneea et al.

GEOCHIMICA ET COSMOCHIMICA ACTA (2014)

Article Geosciences, Multidisciplinary

Global estimate of submarine groundwater discharge based on an observationally constrained radium isotope model

Eun Young Kwon et al.

GEOPHYSICAL RESEARCH LETTERS (2014)

Article Water Resources

Seawater intrusion processes, investigation and management: Recent advances and future challenges

Adrian D. Werner et al.

ADVANCES IN WATER RESOURCES (2013)

Article Microbiology

Functional microbial diversity explains groundwater chemistry in a pristine aquifer

Theodore M. Flynn et al.

BMC MICROBIOLOGY (2013)

Article Biotechnology & Applied Microbiology

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

Johanna Sjostedt et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)

Article Microbiology

Use of phytoplankton-derived dissolved organic carbon by different types of bacterioplankton

Hugo Sarmento et al.

ENVIRONMENTAL MICROBIOLOGY (2012)

Review Marine & Freshwater Biology

The driving forces of porewater and groundwater flow in permeable coastal sediments: A review

Isaac R. Santos et al.

ESTUARINE COASTAL AND SHELF SCIENCE (2012)

Article Microbiology

Microbial CO2 fixation potential in a tar-oil-contaminated porous aquifer

Claudia Kellermann et al.

FEMS MICROBIOLOGY ECOLOGY (2012)

Article Chemistry, Multidisciplinary

Distribution of anaerobic ammonia-oxidizing bacteria in a subterranean estuary

James P. Saenz et al.

MARINE CHEMISTRY (2012)

Article Environmental Sciences

Vulnerability of coastal aquifers to groundwater use and climate change

Grant Ferguson et al.

NATURE CLIMATE CHANGE (2012)

Article Marine & Freshwater Biology

Microbial hotspots in anchialine blue holes: initial discoveries from the Bahamas

Brett C. Gonzalez et al.

HYDROBIOLOGIA (2011)

Article Ecology

Changes in microbial communities in response to submarine groundwater input

Esther Garces et al.

MARINE ECOLOGY PROGRESS SERIES (2011)

Review Microbiology

Microbial seed banks: the ecological and evolutionary implications of dormancy

Jay T. Lennon et al.

NATURE REVIEWS MICROBIOLOGY (2011)

Review Marine & Freshwater Biology

The Effect of Submarine Groundwater Discharge on the Ocean

Willard S. Moore

ANNUAL REVIEW OF MARINE SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Abundance and Diversity of Archaeal Ammonia Oxidizers in a Coastal Groundwater System

Daniel R. Rogers et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)

Article Environmental Sciences

Microbial Activities in a Coastal, Sandy Aquifer System (Donana Natural Protected Area, SW Spain)

Sergio Velasco Ayuso et al.

GEOMICROBIOLOGY JOURNAL (2010)

Review Geosciences, Multidisciplinary

Microbial nitrogen cycling at the saltwater-freshwater interface

Alyson E. Santoro

HYDROGEOLOGY JOURNAL (2010)

Article Biotechnology & Applied Microbiology

A dormancy state in nonspore-forming bacteria

Ramaiah Sachidanandham et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2009)

Review Microbiology

Ecological Genomics of Marine Picocyanobacteria

D. J. Scanlan et al.

MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2009)

Article Ecology

Towards a better understanding of microbial carbon flux in the sea

Josep M. Gasol et al.

AQUATIC MICROBIAL ECOLOGY (2008)

Article Ecology

Stratification of the microbial community inhabiting an anchialine sinkhole

J. R. Seymour et al.

AQUATIC MICROBIAL ECOLOGY (2007)

Article Environmental Sciences

Understanding of aquifer microbiology is tightly linked to sampling approaches

R. Michael Lehman

GEOMICROBIOLOGY JOURNAL (2007)

Review Environmental Sciences

Quantifying submarine groundwater discharge in the coastal zone via multiple methods

W. C. Burnett et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2006)

Article Biotechnology & Applied Microbiology

Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer

AE Santoro et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)

Review Geosciences, Multidisciplinary

Review: Microbial biocenoses in pristine aquifers and an assessment of investigative methods

Nico Goldscheider et al.

HYDROGEOLOGY JOURNAL (2006)

Article Biotechnology & Applied Microbiology

UniFrac: a new phylogenetic method for comparing microbial communities

C Lozupone et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Biotechnology & Applied Microbiology

Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-size filters

T Miyoshi et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)

Article Engineering, Environmental

Groundwater discharge: Potential association with fecal indicator bacteria in the surf zone

AB Boehm et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2004)

Article Chemistry, Analytical

Bacterial Contamination and Submarine Groundwater Discharge-A Possible Link

Adina Paytan et al.

ENVIRONMENTAL CHEMISTRY (2004)

Article Geosciences, Multidisciplinary

Large submarine groundwater discharge (SGD) from a volcanic island

G Kim et al.

GEOPHYSICAL RESEARCH LETTERS (2003)

Review Environmental Sciences

Groundwater and pore water inputs to the coastal zone

WC Burnett et al.

BIOGEOCHEMISTRY (2003)

Article Marine & Freshwater Biology

Abundance, biomass and growth rates of Synechococcus sp in a tropical coastal ecosystem (Philippines, South China Sea)

NSR Agawin et al.

ESTUARINE COASTAL AND SHELF SCIENCE (2003)