4.5 Article

Bacterial Growth Inhibition Screen (BGIS): harnessing recombinant protein toxicity for rapid and unbiased interrogation of protein function

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Bacterial Growth Inhibition Screen (BGIS) identifies a loss-of-function mutant of the DEK oncogene, indicating DNA modulating activities of DEK in chromatin

Haihong Guo et al.

Summary: The DEK oncoprotein regulates cellular chromatin function through protein-protein interactions, with its unique pseudo-SAP/SAP-box domain speculated to play a role in transmitting DNA modulating activities. Random mutagenesis combined with the Bacterial Growth Inhibition Screen (BGIS) was used to generate DNA-binding null mutants, overcoming previous technical limitations. Re-expression of a DEK-DBN mutant failed to reduce the increase in nuclear size compared to wild type in newly established human DEK knockout cells, indicating the importance of DEK-DNA interactions in cellular chromatin organization.

FEBS LETTERS (2021)

Article Biochemistry & Molecular Biology

Features of genomic organization in a nucleotide-resolution molecular model of the Escherichia coli chromosome

William C. Hacker et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)

Sinyeon Kim et al.

NUCLEIC ACIDS RESEARCH (2017)

Letter Hematology

The DEK oncoprotein is upregulated by multiple leukemia-associated fusion genes

Carl Sanden et al.

BLOOD CELLS MOLECULES AND DISEASES (2015)

Review Biochemistry & Molecular Biology

Codon Bias as a Means to Fine-Tune Gene Expression

Tessa E. F. Quax et al.

MOLECULAR CELL (2015)

Review Immunology

The diverse role of RIP kinases in necroptosis and inflammation

John Silke et al.

NATURE IMMUNOLOGY (2015)

Article Multidisciplinary Sciences

High-resolution mapping of architectural DNA binding protein facilitation of a DNA repression loop in Escherichia coli

Nicole A. Becker et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biochemistry & Molecular Biology

The human oncoprotein and chromatin architectural factor DEK counteracts DNA replication stress

A. Deutzmann et al.

ONCOGENE (2015)

Article Biochemistry & Molecular Biology

The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity

Kristina Ivanauskiene et al.

GENOME RESEARCH (2014)

Review Biotechnology & Applied Microbiology

Genome engineering for improved recombinant protein expression in Escherichia coli

Shubhashree Mahalik et al.

MICROBIAL CELL FACTORIES (2014)

Article Biochemistry & Molecular Biology

RBPmap: a web server for mapping binding sites of RNA-binding proteins

Inbal Paz et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Ubiquitylome analysis identifies dysregulation of effector substrates in SPOP-mutant prostate cancer

Jean-Philippe P. Theurillat et al.

SCIENCE (2014)

Review Microbiology

Recombinant protein expression in Escherichia coli: advances and challenges

German L. Rosano et al.

FRONTIERS IN MICROBIOLOGY (2014)

Review Biotechnology & Applied Microbiology

Expanding the landscape of recombinant protein production in Escherichia coli

Alejandro Hochkoeppler

BIOTECHNOLOGY LETTERS (2013)

Article Cell Biology

ARTD10 substrate identification on protein microarrays: regulation of GSK3β by mono-ADP-ribosylation

Karla L. H. Feijs et al.

CELL COMMUNICATION AND SIGNALING (2013)

Review Cell Biology

Stacking the DEK From chromatin topology to cancer stem cells

Lisa M. Privette Vinnedge et al.

CELL CYCLE (2013)

Review Microbiology

Protein aggregation in bacteria: the thin boundary between functionality and toxicity

Natalia G. Bednarska et al.

MICROBIOLOGY-SGM (2013)

Article Multidisciplinary Sciences

Intercellular trafficking of the nuclear oncoprotein DEK

Anjan K. Saha et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Cell & Tissue Engineering

Concise Review: Role of DEK in Stem/Progenitor Cell Biology

Hal E. Broxmeyer et al.

STEM CELLS (2013)

Article Multidisciplinary Sciences

Regulation of NF-κB signalling by the mono-ADP-ribosyltransferase ARTD10

Patricia Verheugd et al.

NATURE COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

Alfredo Castello et al.

Article Multidisciplinary Sciences

Maintenance of muscle stem-cell quiescence by microRNA-489

Tom H. Cheung et al.

NATURE (2012)

Article Biochemistry & Molecular Biology

A rapid method for assessing the RNA-binding potential of a protein

K. Bendak et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Using Bacteria to Determine Protein Kinase Specificity and Predict Target Substrates

Michael F. Chou et al.

PLOS ONE (2012)

Article Cell & Tissue Engineering

DEK Regulates Hematopoietic Stem Engraftment and Progenitor Cell Proliferation

Hal E. Broxmeyer et al.

STEM CELLS AND DEVELOPMENT (2012)

Review Biochemical Research Methods

Tuned Escherichia coli as a host for the expression of disulfide-rich proteins

Gustavo Salinas et al.

BIOTECHNOLOGY JOURNAL (2011)

Article Biochemistry & Molecular Biology

RBPDB: a database of RNA-binding specificities

Kate B. Cook et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Biochemistry & Molecular Biology

HMGB proteins: Interactions with DNA and chromatin

Michal Stros

BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2010)

Article Oncology

Control of Tumorigenesis and Chemoresistance by the DEK Oncogene

Erica Riveiro-Falkenbach et al.

CLINICAL CANCER RESEARCH (2010)

Article Pathology

DEK Proto-Oncogene Expression Interferes with the Normal Epithelial Differentiation Program

Trisha M. Wise-Draper et al.

AMERICAN JOURNAL OF PATHOLOGY (2009)

Article Oncology

Melanoma Proliferation and Chemoresistance Controlled by the DEK Oncogene

Michael S. Khodadoust et al.

CANCER RESEARCH (2009)

Article Biochemistry & Molecular Biology

HMGB1: The Jack-of-All-Trades Protein Is a Master DNA Repair Mechanic

Sabine S. Lange et al.

MOLECULAR CARCINOGENESIS (2009)

Article Biochemistry & Molecular Biology

Eukaryotic HMGB proteins as replacements for HU in E-coli repression loop formation

Nicole A. Becker et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

Solution NMR structure of the N-terminal domain of the human DEK protein

Matthew Devany et al.

PROTEIN SCIENCE (2008)

Review Biochemistry & Molecular Biology

The linker-protein network: control of nucleosomal DNA accessibility

Jordanka Zlatanova et al.

TRENDS IN BIOCHEMICAL SCIENCES (2008)

Article Biochemical Research Methods

Phosphoproteome analysis of E-coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

Boris Macek et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Review Biochemistry & Molecular Biology

The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins

M. Stros et al.

CELLULAR AND MOLECULAR LIFE SCIENCES (2007)

Article Biochemistry & Molecular Biology

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences

Liangjiang Wang et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Multidisciplinary Sciences

Intron removal requires proofreading of U2AF/3′ splice site recognition by DEK

Luis Miguel Mendes Soares et al.

SCIENCE (2006)

Review Biochemistry & Molecular Biology

Expression of highly toxic genes in E-coli:: Special strategies and genetic tools

F Saïda et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2006)

Review Biochemistry & Molecular Biology

Directed evolution of proteins for heterologous expression and stability

C Roodveldt et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

The SAF-box domain of chromatin protein DEK

F Bohm et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemical Research Methods

The toxicity of recombinant proteins in Escherichia coli:: A comparison of overexpression in BL21(DE3), C41(DE3), and C43(DE3)

L Dumon-Seignovert et al.

PROTEIN EXPRESSION AND PURIFICATION (2004)

Article Biochemistry & Molecular Biology

Functional domains of the ubiquitous chromatin protein DEK

F Kappes et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Phosphorylation by protein kinase CK2 changes the DNA binding properties of the human chromatin protein DEK

F Kappes et al.

MOLECULAR AND CELLULAR BIOLOGY (2004)

Review Biotechnology & Applied Microbiology

Recombinant protein folding and misfolding in Escherichia coli

F Baneyx et al.

NATURE BIOTECHNOLOGY (2004)

Article Biochemistry & Molecular Biology

Structure-specific binding of the proto-oncogene protein DEK to DNA

T Waldmann et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

The ubiquitous chromatin protein DEK alters the structure of DNA by introducing positive supercoils

T Waldmann et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Biochemistry & Molecular Biology

HMG 1 and 2: architectural DNA-binding proteins

JO Thomas

BIOCHEMICAL SOCIETY TRANSACTIONS (2001)

Article Biochemistry & Molecular Biology

Subcellular localization of the human proto-oncogene protein DEK

F Kappes et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Article Biochemistry & Molecular Biology

The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

H Le Hir et al.

EMBO JOURNAL (2000)

Article Biochemistry & Molecular Biology

SAF-Box, a conserved protein domain that specifically recognizes scaffold attachment region DNA

M Kipp et al.

MOLECULAR AND CELLULAR BIOLOGY (2000)

Article Biochemistry & Molecular Biology

SAP - a putative DNA-binding motif involved in chromosomal organization

L Aravind et al.

TRENDS IN BIOCHEMICAL SCIENCES (2000)