4.7 Article

Diatom metabarcoding and microscopic analyses from sediment samples at Lake Nam Co, Tibet: The effect of sample-size and bioinformatics on the identified communities

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Engineering, Civil

Seasonal stratification of a deep, high-altitude, dimictic lake: Nam Co, Tibetan Plateau

Junbo Wang et al.

JOURNAL OF HYDROLOGY (2020)

Article Biodiversity Conservation

Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms

Andreia Mortagua et al.

ECOLOGICAL INDICATORS (2019)

Article Marine & Freshwater Biology

Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment

S. F. Rivera et al.

HYDROBIOLOGIA (2018)

Article Biochemistry & Molecular Biology

Optimal extraction methods for the simultaneous analysis of DNA from diverse organisms and sample types

Syrie M. Hermans et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Biochemistry & Molecular Biology

Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units' ecological profiles

Francois Keck et al.

MOLECULAR ECOLOGY RESOURCES (2018)

Article Evolutionary Biology

Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes

Frederic Rimet et al.

ORGANISMS DIVERSITY & EVOLUTION (2018)

Article Environmental Sciences

Sedimentary DNA versus morphology in the analysis of diatom-environment relationships

Katharina Dulias et al.

JOURNAL OF PALEOLIMNOLOGY (2017)

Article Biochemistry & Molecular Biology

A comparison of DNA extraction methods for high-throughput DNA analyses

Lauren M. Schiebelhut et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biochemistry & Molecular Biology

PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data

Sten Anslan et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Biochemistry & Molecular Biology

Taxonomy-free molecular diatom index for high-throughput eDNA biomonitoring

Laure Apotheloz-Perret-Gentil et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Article Multidisciplinary Sciences

Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

Tobias Guldberg Froslev et al.

NATURE COMMUNICATIONS (2017)

Article Environmental Sciences

Aerosol-weakened summer monsoons decrease lake fertilization on the Chinese Loess Plateau

Jianbao Liu et al.

NATURE CLIMATE CHANGE (2017)

Article Biochemical Research Methods

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan et al.

NATURE METHODS (2016)

Article Mathematical & Computational Biology

R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring

Frederic Rimet et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)

Article Multidisciplinary Sciences

VSEARCH: a versatile open source tool for metagenomics

Torbjorn Rognes et al.

Article Engineering, Environmental

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

Joana Amorim Visco et al.

ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)

Article Biochemistry & Molecular Biology

Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies

Jonas Zimmermann et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Multidisciplinary Sciences

Industrial arsenic contamination causes catastrophic changes in freshwater ecosystems

Guangjie Chen et al.

SCIENTIFIC REPORTS (2015)

Article Multidisciplinary Sciences

Transport Distance of Invertebrate Environmental DNA in a Natural River

Kristy Deiner et al.

PLOS ONE (2014)

Article Geosciences, Multidisciplinary

Increased mass over the Tibetan Plateau: From lakes or glaciers?

Guoqing Zhang et al.

GEOPHYSICAL RESEARCH LETTERS (2013)

Article Biochemistry & Molecular Biology

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms

L. Kermarrec et al.

MOLECULAR ECOLOGY RESOURCES (2013)

Article Biochemical Research Methods

UPARSE: highly accurate OTU sequences from microbial amplicon reads

Robert C. Edgar

NATURE METHODS (2013)

Article Plant Sciences

Observations on Hippodonta (Bacillariophyceae) in selected ancient lakes

Aleksandar Pavlov et al.

PHYTOTAXA (2013)

Article Biochemistry & Molecular Biology

Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next-generation DNA sequencing

Donald J. Baird et al.

MOLECULAR ECOLOGY (2012)

Letter Biochemical Research Methods

QIIME allows analysis of high-throughput community sequencing data

J. Gregory Caporaso et al.

NATURE METHODS (2010)

Article Biochemistry & Molecular Biology

The NCBI BioSystems database

Lewis Y. Geer et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

BLAST plus : architecture and applications

Christiam Camacho et al.

BMC BIOINFORMATICS (2009)