4.5 Article

The genome of a new anemone species (Actiniaria: Hormathiidae) provides insights into deep-sea adaptation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Fast and accurate long-read assembly with wtdbg2

Jue Ruan et al.

NATURE METHODS (2020)

Review Zoology

Cellular responses in marine animals to hydrostatic pressure

Paul H. Yancey

JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY (2020)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biochemical Research Methods

fastp: an ultra-fast all-in-one FASTQ preprocessor

Shifu Chen et al.

BIOINFORMATICS (2018)

Review Biotechnology & Applied Microbiology

Critical multifunctional role of the betaine aldehyde dehydrogenase gene in plants

Farahnaz Sadat Golestan Hashemi et al.

BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT (2018)

Article Biotechnology & Applied Microbiology

De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish

Yi Lan et al.

BMC GENOMICS (2018)

Article Multidisciplinary Sciences

Dynamics of genome size evolution in birds and mammals

Aurelie Kapusta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Editorial Material Biology

A natural communication system on genome evolution

Qi Wu et al.

SCIENCE CHINA-LIFE SCIENCES (2017)

Article Ecology

The Pliocene marine megafauna extinction and its impact on functional diversity

Catalina Pimiento et al.

NATURE ECOLOGY & EVOLUTION (2017)

Article Multidisciplinary Sciences

Developmentally Regulated GTP binding protein 1 (DRG1) controls microtubule dynamics

Anna Katharina Schellhaus et al.

SCIENTIFIC REPORTS (2017)

Review Biochemistry & Molecular Biology

A structural appraisal of sterol carrier protein 2

Noelia I. Burgardt et al.

BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS (2017)

Article Biochemistry & Molecular Biology

The Pfam protein families database: towards a more sustainable future

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Biochemistry & Molecular Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Lam-Tung Nguyen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Biochemical Research Methods

InterProScan 5: genome-scale protein function classification

Philip Jones et al.

BIOINFORMATICS (2014)

Article Biodiversity Conservation

Analysis of periodicity of extinction using the 2012 geological timescale

Adrian L. Melott et al.

PALEOBIOLOGY (2014)

Article Multidisciplinary Sciences

Marine fish may be biochemically constrained from inhabiting the deepest ocean depths

Paul H. Yancey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Genetics & Heredity

The yak genome and adaptation to life at high altitude

Qiang Qiu et al.

NATURE GENETICS (2012)

Article Multidisciplinary Sciences

Inference of human population history from individual whole-genome sequences

Heng Li et al.

NATURE (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Review Multidisciplinary Sciences

Cell mechanics and the cytoskeleton

Daniel A. Fletcher et al.

NATURE (2010)

Article Biochemical Research Methods

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

Salvador Capella-Gutierrez et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

Mario Stanke et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

Zhao Xu et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Plant Sciences

Roles of glycine betaine and proline in improving plant abiotic stress resistance

M. Ashraf et al.

ENVIRONMENTAL AND EXPERIMENTAL BOTANY (2007)

Article Biotechnology & Applied Microbiology

Piezophilic adaptation: a genomic point of view

Francesca Simonato et al.

JOURNAL OF BIOTECHNOLOGY (2006)

Article Biochemical Research Methods

CAFE: a computational tool for the study of gene family evolution

T De Bie et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

IMPACT, a protein preferentially expressed in the mouse brain, binds GCN1 and inhibits GCN2 activation

CM Pereira et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

GeneWise and genomewise

E Birney et al.

GENOME RESEARCH (2004)

Article Biochemistry & Molecular Biology

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

BJ Haas et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

Solute accumulation in the deep-sea bacterium Photobacterium profundum

DD Martin et al.

EXTREMOPHILES (2002)

Article Biochemistry & Molecular Biology

Unusual organic osmolytes in deep-sea animals: adaptations to hydrostatic pressure and other perturbants

PH Yancey et al.

COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY (2002)

Article Biochemistry & Molecular Biology

Systematic identification of novel protein domain families associated with nuclear functions

T Doerks et al.

GENOME RESEARCH (2002)

Review Biochemistry & Molecular Biology

Gene structure, intracellular localization, and functional roles of sterol carrier protein-2

AM Gallegos et al.

PROGRESS IN LIPID RESEARCH (2001)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)