相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Droplet scRNA-seq is not zero-inflated
Valentine Svensson
NATURE BIOTECHNOLOGY (2020)
Cell-specific network constructed by single-cell RNA sequencing data
Hao Dai et al.
NUCLEIC ACIDS RESEARCH (2019)
Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq
Qianqian Song et al.
CANCER MEDICINE (2019)
Comprehensive Integration of Single-Cell Data
Tim Stuart et al.
CELL (2019)
SSCC: A Novel Computational Framework for Rapid and Accurate Clustering Large-scale Single Cell RNA-seq Data
Xianwen Ren et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2019)
Single-cell Analysis of CAR-T Cell Activation Reveals A Mixed TH1/TH2 Response Independent of Differentiation
Iva Xhangolli et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2019)
LTMG: a novel statistical modeling of transcriptional expression states in single-cell RNA-Seq data
Changlin Wan et al.
NUCLEIC ACIDS RESEARCH (2019)
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Christoph Hafemeister et al.
GENOME BIOLOGY (2019)
The Reactome Pathway Knowledgebase
Antonio Fabregat et al.
NUCLEIC ACIDS RESEARCH (2018)
Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
Elham Azizi et al.
CELL (2018)
Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
Jason D. Buenrostro et al.
CELL (2018)
Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
Laleh Haghverdi et al.
NATURE BIOTECHNOLOGY (2018)
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
Darren A. Cusanovich et al.
CELL (2018)
Induction and transcriptional regulation of the co-inhibitory gene module in T cells
Norio Chihara et al.
NATURE (2018)
A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade
Livnat Jerby-Arnon et al.
CELL (2018)
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
Nicholas Schaum et al.
NATURE (2018)
VASC: Dimension Reduction and Visualization of Single-cell RNA-seq Data by Deep Variational Autoencoder
Dongfang Wang et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2018)
Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data
Basel Abu-Jamous et al.
GENOME BIOLOGY (2018)
SCENIC: single-cell regulatory network inference and clustering
Sara Aibar et al.
NATURE METHODS (2017)
Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer
Sidharth V. Puram et al.
CELL (2017)
A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells (vol 166, pg 1500, 2016)
Meromit Singer et al.
CELL (2017)
powsimR: power analysis for bulk and single cell RNA-seq experiments
Beate Vieth et al.
BIOINFORMATICS (2017)
Splatter: simulation of single-cell RNA sequencing data
Luke Zappia et al.
GENOME BIOLOGY (2017)
Frontotemporal dementia: insights into the biological underpinnings of disease through gene co-expression network analysis
Raffaele Ferrari et al.
MOLECULAR NEURODEGENERATION (2016)
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
Itay Tirosh et al.
SCIENCE (2016)
Penalized count data regression with application to hospital stay after pediatric cardiac surgery
Zhu Wang et al.
STATISTICAL METHODS IN MEDICAL RESEARCH (2016)
A Single-Cell Transcriptome Atlas of the Human Pancreas
Mauro J. Muraro et al.
CELL SYSTEMS (2016)
Single-cell Transcriptome Study as Big Data
Pingjian Yu et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2016)
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Aaron T. L. Lun et al.
GENOME BIOLOGY (2016)
Design and computational analysis of single-cell RNA-sequencing experiments
Rhonda Bacher et al.
GENOME BIOLOGY (2016)
The Technology and Biology of Single-Cell RNA Sequencing
Aleksandra A. Kolodziejczyk et al.
MOLECULAR CELL (2015)
Single-cell analysis reveals a stem-cell program in human metastatic breast cancer cells
Devon A. Lawson et al.
NATURE (2015)
From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
Georgi K. Marinov et al.
GENOME RESEARCH (2014)
KEGG-PATH: Kyoto encyclopedia of genes and genomes-based pathway analysis using a path analysis model
Junli Du et al.
MOLECULAR BIOSYSTEMS (2014)
Validation of noise models for single-cell transcriptomics
Dominic Grun et al.
NATURE METHODS (2014)
Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types
Yang Yang et al.
NATURE COMMUNICATIONS (2014)
Single Cell Genomics: Advances and Future Perspectives
Iain C. Macaulay et al.
PLOS GENETICS (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
Accounting for technical noise in single-cell RNA-seq experiments
Philip Brennecke et al.
NATURE METHODS (2013)
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Davis J. McCarthy et al.
NUCLEIC ACIDS RESEARCH (2012)
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
Guangchuang Yu et al.
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)
Whole miRNome-wide Differential Co-expression of MicroRNAs
Cord F. Stäehler et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2012)
Molecular signatures database (MSigDB) 3.0
Arthur Liberzon et al.
BIOINFORMATICS (2011)
Computational Analysis of Drought Stress-Associated miRNAs and miRNA Co-Regulation Network in Physcomitrella patens
Ping Wan et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2011)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
WGCNA: an R package for weighted correlation network analysis
Peter Langfelder et al.
BMC BIOINFORMATICS (2008)
Gene Expression Data Classification Using Consensus Independent Component Analysis
Chun-Hou Zheng et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2008)
Stochastic mRNA synthesis in mammalian cells
Arjun Raj et al.
PLOS BIOLOGY (2006)
A gene-coexpression network for global discovery of conserved genetic modules
JM Stuart et al.
SCIENCE (2003)