期刊
FRONTIERS IN PLANT SCIENCE
卷 11, 期 -, 页码 -出版社
FRONTIERS MEDIA SA
DOI: 10.3389/fpls.2020.576078
关键词
Phaseolus vulgaris; Rab GTPase; biological nitrogen fixation pathway; NRT1 genes; MATE efflux proteins; genome-wide association study; Aux; IAA family
资金
- USAID Feed the Future Innovation Laboratory for Climate-Resilient Beans [USAID OAA-A-13-00077]
Among grain legume crops, common beans (Phaseolus vulgaris L.) are considered to have poor biological nitrogen (N-2) fixation (BNF) capabilities although variation in N-2 fixing capabilities exists within the species. The availability of genetic panel varying in BNF capacity and a large-scale single nucleotide polymorphism (SNP) data set for common bean provided an opportunity to discover genetic factors associated with N-2 fixation among genotypes in the Middle American gene pool. Using nodulation and percentage of N-2-derived from atmosphere (%NDFA) data collected from field trials, at least 11 genotypes with higher levels of BNF capacity were identified. Genome-wide association studies (GWASs) detected both major and minor effects that control these traits. A major nodulation interval at Pv06:28.0-28.27 Mbp was discovered. In this interval, the peak SNP was located within a small GTPase that positively regulates cellular polarity and growth of root hair tips. Located 20 kb upstream of this peak SNP is an auxin-responsive factor AUX/indole acetic auxin (IAA)-related gene involved in auxin transportation during root nodulation. For %NDFA, nitrate (NO3-) transporters, NRT1:2 and NRT1.7 (Pv02:8.64), squamosa promoter binding transcriptome factor (Pv08:28.42), and multi-antimicrobial extrusion protein (MATE) efflux family protein (Pv06:10.91) were identified as candidate genes. Three additional QTLs were identified on chromosomes Pv03:5.24, Pv09:25.89, and Pv11: 32.89 Mbp. These key candidate genes from both traits were integrated with previous results on N-2 fixation to describe a BNF pathway.
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