相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Plant Soft Rot Development and Regulation from the Viewpoint of Transcriptomic Profiling
Ivan Tsers et al.
PLANTS-BASEL (2020)
Transcriptomic dataset of wild type and phoP mutant Pectobacterium versatile
Natalia Gogoleva et al.
DATA IN BRIEF (2020)
Identification of a Formate-Dependent Uric Acid Degradation Pathway in Escherichia coli
Yumi Iwadate et al.
JOURNAL OF BACTERIOLOGY (2019)
Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants
Perrine Portier et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2019)
Solution structure and biochemical characterization of a spare part protein that restores activity to an oxygen-damaged glycyl radical enzyme
Sarah E. J. Bowman et al.
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY (2019)
Ubiquinone Biosynthesis over the Entire O-2 Range: Characterization of a Conserved O-2-Independent Pathway
Ludovic Pelosi et al.
MBIO (2019)
Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in Pectobacterium atrosepticum during systemic colonization of tobacco plants
Vladimir Gorshkov et al.
EUROPEAN JOURNAL OF PLANT PATHOLOGY (2018)
Draft Genome Sequences of New Genomospecies Candidatus Pectobacterium maceratum Strains, Which Cause Soft Rot in Plants
Fedor Shirshikov et al.
GENOME ANNOUNCEMENTS (2018)
Three-dimensional structures and functional studies of two GH43 arabinofuranosidases from Weissella sp strain 142 and Lactobacillus brevis
Javier A. Linares-Pasten et al.
FEBS JOURNAL (2017)
Osmosensing by the bacterial PhoQ/PhoP two-component system
Jing Yuan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
An updated version of NPIDB includes new classifications of DNA-protein complexes and their families
Olga Zanegina et al.
NUCLEIC ACIDS RESEARCH (2016)
Metabolism of L-arabinose in plants
Toshihisa Kotake et al.
JOURNAL OF PLANT RESEARCH (2016)
Near-optimal probabilistic RNA-seq quantification
Nicolas L. Bray et al.
NATURE BIOTECHNOLOGY (2016)
SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals
Yevgeny Nikolaichik et al.
PEERJ (2016)
Structural basis of DNA sequence recognition by the response regulator PhoP in Mycobacterium tuberculosis
Xiaoyuan He et al.
SCIENTIFIC REPORTS (2016)
CysB Negatively Affects the Transcription of pqsR and Pseudomonas Quinolone Signal Production in Pseudomonas aeruginosa
John M. Farrow et al.
JOURNAL OF BACTERIOLOGY (2015)
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon
Anne M. Stringer et al.
JOURNAL OF BACTERIOLOGY (2014)
Effect of topology of quorum sensing-related genes in Pectobacterium atrosepticum on their expression
N. E. Gogoleva et al.
MOLECULAR BIOLOGY (2014)
The carbohydrate-active enzymes database (CAZy) in 2013
Vincent Lombard et al.
NUCLEIC ACIDS RESEARCH (2014)
Bacterial pectate lyases, structural and functional diversity
Nicole Hugouvieux-Cotte-Pattat et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2014)
Bacterial Mg2+ Homeostasis, Transport, and Virulence
Eduardo A. Groisman et al.
ANNUAL REVIEW OF GENETICS, VOL 47 (2013)
RegPrecise 3.0-A resource for genome-scale exploration of transcriptional regulation in bacteria
Pavel S. Novichkov et al.
BMC GENOMICS (2013)
Fortifying the barrier: the impact of lipid A remodelling on bacterial pathogenesis
Brittany D. Needham et al.
NATURE REVIEWS MICROBIOLOGY (2013)
Computational analysis of bacterial RNA-Seq data
Ryan McClure et al.
NUCLEIC ACIDS RESEARCH (2013)
Virulence and stress-related periplasmic protein (VisP) in bacterial/host associations
Cristiano G. Moreira et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB
Audrey Coornaert et al.
PLOS GENETICS (2013)
Stability and Broad-Sense Heritability of Mineral Content in Potato: Calcium and Magnesium
C. R. Brown et al.
AMERICAN JOURNAL OF POTATO RESEARCH (2012)
Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
Jian Ye et al.
BMC BIOINFORMATICS (2012)
Role of PhoP-PhoQ two-component system in pellicle formation, virulence and survival in harsh environments of 3937
Md Manjurul Haque et al.
JOURNAL OF GENERAL PLANT PATHOLOGY (2012)
Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing
Vivek Anantharaman et al.
MOLECULAR BIOSYSTEMS (2012)
Primer3-new capabilities and interfaces
Andreas Untergasser et al.
NUCLEIC ACIDS RESEARCH (2012)
The role of TerW protein in the tellurite resistance of uropathogenic Escherichia coli
Lenka Valkovicova et al.
BIOLOGIA (2011)
Genome-wide detection of novel regulatory RNAs in E. coli
Rahul Raghavan et al.
GENOME RESEARCH (2011)
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
Cynthia M. Sharma et al.
MOLECULAR MICROBIOLOGY (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Deep and wide digging for binding motifs in ChIP-Seq data
I. V. Kulakovskiy et al.
BIOINFORMATICS (2010)
Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes
Gurmukh Sahota et al.
BIOINFORMATICS (2010)
Overview on Plant Antimicrobial Peptides
Ana Maria Benko-Iseppon et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2010)
Transcriptional control of the pvdS iron starvation sigma factor gene by the master regulator of sulfur metabolism CysB in Pseudomonas aeruginosa
Francesco Imperi et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Promoter and Riboswitch Control of the Mg2+ Transporter MgtA from Salmonella enterica
Michael J. Cromie et al.
JOURNAL OF BACTERIOLOGY (2010)
Crystal Structure of an Exo-1,5-α-L-arabinofuranosidase from Streptomyces avermitilis Provides Insights into the Mechanism of Substrate Discrimination between Exo- and Endo-type Enzymes in Glycoside Hydrolase Family 43
Zui Fujimoto et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Intra- and extra-cellular excretion of carboxylates
Stefan Meyer et al.
TRENDS IN PLANT SCIENCE (2010)
Defining the Plasticity of Transcription Factor Binding Sites by Deconstructing DNA Consensus Sequences: The PhoP-Binding Sites among Gamma/Enterobacteria
Oscar Harari et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
AraC protein, regulation of the l-arabinose operon in Escherichia coli, and the light switch mechanism of AraC action
Robert Schleif
FEMS MICROBIOLOGY REVIEWS (2010)
Furanose-specific Sugar Transport CHARACTERIZATION OF A BACTERIAL GALACTOFURANOSE-BINDING PROTEIN
Richard S. P. Horler et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2009)
Evolution of a Bacterial Regulon Controlling Virulence and Mg2+ Homeostasis
J. Christian Perez et al.
PLOS GENETICS (2009)
Tellurite: history, oxidative stress, and molecular mechanisms of resistance
Thomas Girard Chasteen et al.
FEMS MICROBIOLOGY REVIEWS (2009)
Regulatory network controlling extracellular proteins in Erwinia carotovora subsp carotovora:: FlhDC, the master regulator of flagellar genes, activates rsmB regulatory RNA production by affecting gacA and hexA (lrhA) expression
Yaya Cui et al.
JOURNAL OF BACTERIOLOGY (2008)
Substrate specificity and membrane topology of Escherichia coli PgpB, an undecaprenyl pyrophosphate phosphatase
Thierry Touze et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Citrate uptake into Pectobacterium atrosepticum is critical for bacterial virulence
Claude Urbany et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2008)
Structural biology of pectin degradation by Enterobacteriaceae
D. Wade Abbott et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)
Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum
Hui Liu et al.
PLOS PATHOGENS (2008)
Periplasmic phosphorylation of lipid A is linked to the synthesis of undecaprenyl phosphate
Thierry Touze et al.
MOLECULAR MICROBIOLOGY (2008)
Activation of the bacterial sensor kinase PhoQ by acidic pH
Lynne R. Prost et al.
MOLECULAR CELL (2007)
Identification and characterization of a novel periplasmic polygalacturonic acid binding protein from Yersinia enterolitica
D. Wade Abbott et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
The contribution of tellurite resistance genes to the fitness of Escherichia coli uropathogenic strains
Danka Valkova et al.
CENTRAL EUROPEAN JOURNAL OF BIOLOGY (2007)
Direct evidence for the modulation of the activity of the Erwinia chrysanthemi quorum-sensing regulator ExpR by acylhomoserine lactone pheromone
Sandra Castang et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Erwinia carotovora subspecies produce duplicate variants of ExpR, LuxR homologs that activate rsmA transcription but differ in their interactions with N-acylhomoserine lactone signals
Yaya Cui et al.
JOURNAL OF BACTERIOLOGY (2006)
Cooperation of two distinct ExpR regulators controls quorum sensing specificity and virulence in the plant pathogen Erwinia carotovora
Solveig Sjobolm et al.
MOLECULAR MICROBIOLOGY (2006)
Identification of the central quorum sensing regulator of virulence in the enteric phytopathogen, Erwinia carotovora: the VirR repressor
T Burr et al.
MOLECULAR MICROBIOLOGY (2006)
Dimerization and DNA binding of the Salmonella enterica PhoP response regulator are phosphorylation independent
P Perron-Savard et al.
MICROBIOLOGY-SGM (2005)
Recognition of antimicrobial peptides by a bacterial sensor kinase
MW Bader et al.
CELL (2005)
Rotting softly and stealthily
IK Toth et al.
CURRENT OPINION IN PLANT BIOLOGY (2005)
ExpR, a LuxR homolog of Erwinia carotovora subsp carotovora, activates transcription of rsmA, which specifies a global regulatory RNA-binding protein
YY Cui et al.
JOURNAL OF BACTERIOLOGY (2005)
Why are pathogenic staphylococci so lysozyme resistant?: The peptidoglycan O-acetyltransferase OatA is the major determinant for lysozyme resistance of Staphylococcus aureus
A Bera et al.
MOLECULAR MICROBIOLOGY (2005)
Genetic regulation of pathogenicity and virulence factors in bacteria Erwinia carotovora subsp atroseptica:: Identification of gene kduD
VE Myamin et al.
RUSSIAN JOURNAL OF GENETICS (2004)
Identification of regulators of hrp/hop genes of Erwinia carotovora ssp carotovora and characterization of HrpLEcc (SigmaLEcc), an alternative sigma factor
A Chatterjee et al.
MOLECULAR PLANT PATHOLOGY (2002)
Characterization of the citrate/acetate antiporter CitW of Klebsiella pneumoniae
CN Kästner et al.
ARCHIVES OF MICROBIOLOGY (2002)
Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR -: art. no. e36
MW Pfaffl et al.
NUCLEIC ACIDS RESEARCH (2002)
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
Jo Vandesompele et al.
GENOME BIOLOGY (2002)
YfiD of Escherichia coli and Y061 of bacteriophage T4 as autonomous glycyl radical cofactors reconstituting the catalytic center of oxygen-fragmented pyruvate formate-lyase
AFV Wagner et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2001)
Effects of the two-component system comprising GacA and GacS of Erwinia carotovora subsp carotovora on the production of global regulatory rsmB RNA, extracellular enzymes, and HarpinEcc
Y Cui et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2001)
hexA of Erwinia carotovora ssp carotovora strain Ecc71 negatively regulates production of RpoS and rsmB RNA, a global regulator of extracellular proteins, plant virulence and the quorum-sensing signal, N-(3-oxohexanoyl)-L-homoserine lactone
A Mukherjee et al.
ENVIRONMENTAL MICROBIOLOGY (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
