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Salvatore Di Giorgio et al.
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Bette Korber et al.
CELL (2020)
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P. Simmonds
MSPHERE (2020)
Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant
Leonid Yurkovetskiy et al.
CELL (2020)
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Nicholas M. Fountain-Jones et al.
VIRUS EVOLUTION (2020)
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
ADAR1: Editor-in-Chief of Cytoplasmic Innate Immunity
Mart M. Lamers et al.
FRONTIERS IN IMMUNOLOGY (2019)
Coupling adaptive molecular evolution to phylodynamics using fittness-dependent birth-death models
David A. Rasmussen et al.
ELIFE (2019)
HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny
Joseph Crispell et al.
MICROBIAL GENOMICS (2019)
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees
Uyen Mai et al.
BMC GENOMICS (2018)
Modeling the Embrace of a Mutator: APOBEC Selection of Nucleic Acid Ligands
Jason D. Salter et al.
TRENDS IN BIOCHEMICAL SCIENCES (2018)
APOBEC3-mediated restriction of RNA virus replication
Aleksandra Milewska et al.
SCIENTIFIC REPORTS (2018)
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics
Denise Kuhnert et al.
PLOS PATHOGENS (2018)
Bayesian inference of ancestral dates on bacterial phylogenetic trees
Xavier Didelot et al.
NUCLEIC ACIDS RESEARCH (2018)
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides
Pilar Domingo-Calap et al.
PLOS PATHOGENS (2018)
GGTREE: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
Guangchuang Yu et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
GISAID: Global initiative on sharing all influenza data - from vision to reality
Yuelong Shu et al.
EUROSURVEILLANCE (2017)
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
Mircea Cretu Stancu et al.
NATURE COMMUNICATIONS (2017)
Data, disease and diplomacy: GISAID's innovative contribution to global health
Stefan Elbe et al.
GLOBAL CHALLENGES (2017)
Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data
Melanie Schirmer et al.
BMC BIOINFORMATICS (2016)
The evolution of Ebola virus: Insights from the 2013-2016 epidemic
Edward C. Holmes et al.
NATURE (2016)
The APOBEC Protein Family: United by Structure, Divergent in Function
Jason D. Salter et al.
TRENDS IN BIOCHEMICAL SCIENCES (2016)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
phytools: an R package for phylogenetic comparative biology (and other things)
Liam J. Revell
METHODS IN ECOLOGY AND EVOLUTION (2012)
Diverse functions for DNA and RNA editing in the immune system
Claire E. Hamilton et al.
RNA BIOLOGY (2010)
Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses
Patrick C. Y. Woo et al.
VIROLOGY (2007)
Estimating a binary character's effect on speciation and extinction
Wayne P. Maddison et al.
SYSTEMATIC BIOLOGY (2007)
Discovery of an RNA virus 3′→5′ exoribonuclease that is critically involved in coronavirus RNA synthesis
E Minskaia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Mutational patterns correlate with genome organization in SARS and other coronaviruses
A Grigoriev
TRENDS IN GENETICS (2004)
Moderate mutation rate in the SARS coronavirus genome and its implications
ZM Zhao et al.
BMC EVOLUTIONARY BIOLOGY (2004)
Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage
EJ Snijder et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Broad antiretroviral defence by human APOBEC3G through lethal editing of nascent reverse transcripts
B Mangeat et al.
NATURE (2003)
DNA determination mediates innate immunity to retroviral infection
RS Harris et al.
CELL (2003)