相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO2
Thomas Gassler et al.
NATURE BIOTECHNOLOGY (2020)
Growth of E. coli on formate and methanol via the reductive glycine pathway
Seohyoung Kim et al.
NATURE CHEMICAL BIOLOGY (2020)
Renewable methanol and formate as microbial feedstocks
Charles A. R. Cotton et al.
CURRENT OPINION IN BIOTECHNOLOGY (2020)
A one-carbon path for fixing CO2
Ari Satanowski et al.
EMBO REPORTS (2020)
Light-powered CO2 fixation ina chloroplast mimic with natural and synthetic parts
Tarryn E. Miller et al.
SCIENCE (2020)
An optimized methanol assimilation pathway relying on promiscuous formaldehyde-condensing aldolases in E. coli
Hai He et al.
METABOLIC ENGINEERING (2020)
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans
Irene Sanchez-Andrea et al.
NATURE COMMUNICATIONS (2020)
Deletion of four genes in Escherichia coli enables preferential consumption of xylose and secretion of glucose
Camil A. C. Diaz et al.
METABOLIC ENGINEERING (2019)
AnnoTree: visualization and exploration of a functionally annotated microbial tree of life
Kerrin Mendler et al.
NUCLEIC ACIDS RESEARCH (2019)
Revisiting Trade-offs between Rubisco Kinetic Parameters
Avi Flamholz et al.
BIOCHEMISTRY (2019)
Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2-Binding Potential of Reductases
Iria Bernhardsgruetter et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2019)
Four amino acids define the CO2 binding pocket of enoyl-CoA carboxylases/reductases
Gabriele M. M. Stoffel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Conversion of Escherichia coli to Generate All Biomass Carbon from CO2
Shmuel Gleizer et al.
CELL (2019)
Replacing the Ethylmalonyl-CoA Pathway with the Glyoxylate Shunt Provides Metabolic Flexibility in the Central Carbon Metabolism of Methylobacterium extorquens AM1
Lennart Schada von Borzyskowski et al.
ACS SYNTHETIC BIOLOGY (2018)
Solvent production by engineered Ralstonia eutropha: channeling carbon to biofuel
Jayashree Chakravarty et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)
Reinforcing carbon fixation: CO2 reduction replacing and supporting carboxylation
Charles A. R. Cotton et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
A short history of RubisCO: the rise and fall (?) of Nature's predominant CO2 fixing enzyme
Tobias J. Erb et al.
CURRENT OPINION IN BIOTECHNOLOGY (2018)
Exceeding the theoretical fermentation yield in mixotrophic Rubisco-based engineered Escherichia coli
I-Ting Tseng et al.
METABOLIC ENGINEERING (2018)
Daring metabolic designs for enhanced plant carbon fixation
Arren Bar-Even
PLANT SCIENCE (2018)
Construction and evolution of an Escherichia coli strain relying on nonoxidative glycolysis for sugar catabolism
Paul P. Lin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Reversibility of citrate synthase allows autotrophic growth of a thermophilic bacterium
Achim Mall et al.
SCIENCE (2018)
A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile
Takuro Nunoura et al.
SCIENCE (2018)
Methanol-essential growth of Escherichia coli
Fabian Meyer et al.
NATURE COMMUNICATIONS (2018)
Ribulose Monophosphate Shunt Provides Nearly All Biomass and Energy Required for Growth of E. coli
Hai He et al.
ACS SYNTHETIC BIOLOGY (2018)
In Vivo Assimilation of One-Carbon via a Synthetic Reductive Glycine Pathway in Escherichia coli
Oren Yishai et al.
ACS SYNTHETIC BIOLOGY (2018)
Reserve Flux Capacity in the Pentose Phosphate Pathway Enables Escherichia coli's Rapid Response to Oxidative Stress
Dimitris Christodoulou et al.
CELL SYSTEMS (2018)
Synthetic methanol auxotrophy of Escherichia coli for methanol-dependent growth and production
Chang-Ting Chen et al.
METABOLIC ENGINEERING (2018)
OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli
Oliver Haedicke et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Artificial pathway emergence in central metabolism from three recursive phosphoketolase reactions
Jan L. Kruesemann et al.
FEBS JOURNAL (2018)
NADPH-Auxotrophic E-coil: A Sensor Strain for Testing in Vivo Regeneration of NADPH
Steffen N. Lindner et al.
ACS SYNTHETIC BIOLOGY (2018)
Comprehensive analysis of glucose and xylose metabolism in Escherichia coli under aerobic and anaerobic conditions by 13C metabolic flux analysis
Jacqueline E. Gonzalez et al.
METABOLIC ENGINEERING (2017)
iML1515, a knowledgebase that computes Escherichia coli traits
Jonathan M. Monk et al.
NATURE BIOTECHNOLOGY (2017)
The genetic basis for the adaptation of E-coli to sugar synthesis from CO2
Elad Herz et al.
NATURE COMMUNICATIONS (2017)
Design principles of autocatalytic cycles constrain enzyme kinetics and force low substrate saturation at flux branch points
Uri Barenholz et al.
ELIFE (2017)
Holistic bioengineering: rewiring central metabolism for enhanced bioproduction
Selcuk Aslan et al.
BIOCHEMICAL JOURNAL (2017)
Formate Assimilation: The Metabolic Architecture of Natural and Synthetic Pathways
Arren Bar-Even
BIOCHEMISTRY (2016)
Sugar Synthesis from CO2 in Escherichia coli
Niv Antonovsky et al.
CELL (2016)
Harnessing the power of microbial autotrophy
Nico J. Claassens et al.
NATURE REVIEWS MICROBIOLOGY (2016)
pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism
Niall M. Mangan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A repeat protein links Rubisco to form the eukaryotic carbon-concentrating organelle
Luke C. M. Mackinder et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
A synthetic pathway for the fixation of carbon dioxide in vitro
Thomas Schwander et al.
SCIENCE (2016)
Bacterial reference genes for gene expression studies by RT-qPCR: survey and analysis
Danilo J. P. Rocha et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2015)
Seven gene deletions in seven days: Fast generation of Escherichia coli strains tolerant to acetate and osmotic stress
Sheila I. Jensen et al.
SCIENTIFIC REPORTS (2015)
Pathway Thermodynamics Highlights Kinetic Obstacles in Central Metabolism
Elad Noor et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes
Arren Bar-Even et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2013)
Rubisco-based engineered Escherichia coli for in situ carbon dioxide recycling
Zong-Yu Zhuang et al.
BIORESOURCE TECHNOLOGY (2013)
Carbon dioxide fixation by Calvin-Cycle enzymes improves ethanol yield in yeast
Victor Guadalupe-Medina et al.
BIOTECHNOLOGY FOR BIOFUELS (2013)
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
Ali Ebrahim et al.
BMC SYSTEMS BIOLOGY (2013)
Synthetic non-oxidative glycolysis enables complete carbon conservation
Igor W. Bogorad et al.
NATURE (2013)
Expression of the sub-pathways of the Chloroflexus aurantiacus 3-hydroxypropionate carbon fixation bicycle in E. coli: Toward horizontal transfer of autotrophic growth
Matthew D. Mattozzi et al.
METABOLIC ENGINEERING (2013)
Spanning high-dimensional expression space using ribosome-binding site combinatorics
Lior Zelcbuch et al.
NUCLEIC ACIDS RESEARCH (2013)
A survey of carbon fixation pathways through a quantitative lens
Arren Bar-Even et al.
JOURNAL OF EXPERIMENTAL BOTANY (2012)
eQuilibrator-the biochemical thermodynamics calculator
Avi Flamholz et al.
NUCLEIC ACIDS RESEARCH (2012)
The Emergence and Early Evolution of Biological Carbon-Fixation
Rogier Braakman et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Beyond the Calvin Cycle: Autotrophic Carbon Fixation in the Ocean
Michael Huegler et al.
ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)
Anaplerotic Role for Cytosolic Malic Enzyme in Engineered Saccharomyces cerevisiae Strains
Rintze M. Zelle et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways
Ivan A. Berg
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Elemental formula annotation of polar and lipophilic metabolites using 13C, 15N and 34S isotope labelling, in combination with high- resolution mass spectrometry
Patrick Giavalisco et al.
PLANT JOURNAL (2011)
6-Phosphogluconate Dehydrogenase Mechanism EVIDENCE FOR ALLOSTERIC MODULATION BY SUBSTRATE
Stefania Hanau et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Design and analysis of synthetic carbon fixation pathways
Arren Bar-Even et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Substrate-Enzyme Competition Attenuates Upregulated Anaplerotic Flux Through Malic Enzyme in Hypertrophied Rat Heart and Restores Triacylglyceride Content Attenuating Upregulated Anaplerosis in Hypertrophy
Kayla M. Pound et al.
CIRCULATION RESEARCH (2009)
The Auxiliary Substrate Concept: From simple considerations to heuristically valuable knowledge
Wolfgang Babel
ENGINEERING IN LIFE SCIENCES (2009)
A Novel Mechanism of Transposon-Mediated Gene Activation
Zhongge Zhang et al.
PLOS GENETICS (2009)
Escherichia coli strains with promoter libraries constructed by Red/ET recombination pave the way for transcriptional fine-tuning
Stephan Braatsch et al.
BIOTECHNIQUES (2008)
Analyzing real-time PCR data by the comparative C-T method
Thomas D. Schmittgen et al.
NATURE PROTOCOLS (2008)
A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in archaea
Ivan A. Berg et al.
SCIENCE (2007)
The effect of NADP-dependent malic enzyme expression and anaerobic C4 metabolism in Escherichia coli compared with other anaplerotic enzymes
Y. -D. Kwon et al.
JOURNAL OF APPLIED MICROBIOLOGY (2007)
Synthesis Of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase:: The ethylmalonyl-CoA pathway
Tobias J. Erb et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Complete set of ORF clones of Escherichia coli ASKA library (A complete Set of E. coli K-12 ORF archive):: Unique resources for biological research
Masanari Kitagawa et al.
DNA RESEARCH (2005)
Nucleotide binding affinities of the intact proton-trans locating transhydrogenase from Escherichia coli
T Bizouarn et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2005)
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
U Sauer et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2004)
Regulation of NAD- and NADP-dependent isocitrate dehydrogenases by reduction levels of pyridine nucleotides in mitochondria and cytosol of pea leaves
AU Igamberdiev et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2003)
Characterization of isocitrate dehydrogenase from the green sulfur bacterium Chlorobium limicola -: A carbon dioxide-fixing enzyme in the reductive tricarboxylic acid cycle
T Kanao et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)
Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCT method
KJ Livak et al.
METHODS (2001)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
