相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells
Alan Perez-Rathke et al.
GENOME BIOLOGY (2020)
Visualizing DNA folding and RNA in embryos at single-cell resolution
Leslie J. Mateo et al.
NATURE (2019)
Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression
Yad Ghavi-Helm et al.
NATURE GENETICS (2019)
Predicting three-dimensional genome organization with chromatin states
Yifeng Qi et al.
PLOS COMPUTATIONAL BIOLOGY (2019)
Polycomb-Dependent Chromatin Looping Contributes to Gene Silencing during Drosophila Development
Yuki Ogiyama et al.
MOLECULAR CELL (2018)
Polymer physics predicts the effects of structural variants on chromatin architecture
Simona Bianco et al.
NATURE GENETICS (2018)
Chromosome-nuclear envelope attachments affect interphase chromosome territories and entanglement
Nicholas Allen Kinney et al.
EPIGENETICS & CHROMATIN (2018)
Structural absorption by barbule microstructures of super black bird of paradise feathers
Dakota E. McCoy et al.
NATURE COMMUNICATIONS (2018)
TADs are 3D structural units of higher-order chromosome organization in Drosophila
Quentin Szabo et al.
SCIENCE ADVANCES (2018)
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
Bogdan Bintu et al.
SCIENCE (2018)
Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci
Lei Liu et al.
PLOS COMPUTATIONAL BIOLOGY (2018)
Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
Ilya M. Flyamer et al.
NATURE (2017)
3D structures of individual mammalian genomes studied by single-cell Hi-C
Tim J. Stevens et al.
NATURE (2017)
Cell-cycle dynamics of chromosomal organization at single-cell resolution
Takashi Nagano et al.
NATURE (2017)
Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data
Gamze Gursoy et al.
NUCLEIC ACIDS RESEARCH (2017)
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
Michele Di Pierro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data
Borbala Mifsud et al.
PLOS ONE (2017)
miniMDS: 3D structural inference from high-resolution Hi-C data
Lila Rieber et al.
BIOINFORMATICS (2017)
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
Clemens B. Hug et al.
CELL (2017)
MOGEN: a tool for reconstructing 3D models of genomes from chromosomal conformation capturing data
Tuan Trieu et al.
BIOINFORMATICS (2016)
Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
Sergey V. Ulianov et al.
GENOME RESEARCH (2016)
Chromatin Domains: The Unit of Chromosome Organization
Jesse R. Dixon et al.
MOLECULAR CELL (2016)
Transferable model for chromosome architecture
Michele Di Pierro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Spatial organization of chromatin domains and compartments in single chromosomes
Siyuan Wang et al.
SCIENCE (2016)
HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure
Chenchen Zou et al.
GENOME BIOLOGY (2016)
The Role of Chromosome Domains in Shaping the Functional Genome
Tom Sexton et al.
CELL (2015)
Wash Interacts with Lamin and Affects Global Nuclear Organization
Jeffrey M. Verboon et al.
CURRENT BIOLOGY (2015)
Inferential modeling of 3D chromatin structure
Siyu Wang et al.
NUCLEIC ACIDS RESEARCH (2015)
Topology, structures, and energy landscapes of human chromosomes
Bin Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
From Egg to Gastrula: How the Cell Cycle Is Remodeled During the Drosophila Mid-Blastula Transition
Jeffrey A. Farrell et al.
ANNUAL REVIEW OF GENETICS, VOL 48 (2014)
A statistical approach for inferring the 3D structure of the genome
Nelle Varoquaux et al.
BIOINFORMATICS (2014)
Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
Luca Giorgetti et al.
CELL (2014)
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S. P. Rao et al.
CELL (2014)
Large-scale chromatin organization: the good, the surprising, and the still perplexing
Andrew S. Belmont
CURRENT OPINION IN CELL BIOLOGY (2014)
Chromatin insulators and long-distance interactions in Drosophila
Olga Kyrchanova et al.
FEBS LETTERS (2014)
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
Ferhat Ay et al.
GENOME RESEARCH (2014)
A scalable bootstrap for massive data
Ariel Kleiner et al.
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY (2014)
Topologically associating domains are stable units of replication-timing regulation
Benjamin D. Pope et al.
NATURE (2014)
Enhancer loops appear stable during development and are associated with paused polymerase
Yad Ghavi-Helm et al.
NATURE (2014)
CTCF: an architectural protein bridging genome topology and function
Chin-Tong Ong et al.
NATURE REVIEWS GENETICS (2014)
Spatial confinement is a major determinant of the folding landscape of human chromosomes
Gamze Guersoy et al.
NUCLEIC ACIDS RESEARCH (2014)
Intrapopulation Genome Size Variation in D. melanogaster Reflects Life History Variation and Plasticity
Lisa L. Ellis et al.
PLOS GENETICS (2014)
Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome
Jutta Vogelmann et al.
PLOS GENETICS (2014)
DNA copy number evolution in Drosophila cell lines
Hangnoh Lee et al.
GENOME BIOLOGY (2014)
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
Takashi Nagano et al.
NATURE (2013)
A high-resolution map of the three-dimensional chromatin interactome in human cells
Fulai Jin et al.
NATURE (2013)
Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
Tom Sexton et al.
CELL (2012)
Gene Density, Transcription, and Insulators Contribute to the Partition of the Drosophila Genome into Physical Domains
Chunhui Hou et al.
MOLECULAR CELL (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
Spatial partitioning of the regulatory landscape of the X-inactivation centre
Elphege P. Nora et al.
NATURE (2012)
Iterative correction of Hi-C data reveals hallmarks of chromosome organization
Maxim Imakaev et al.
NATURE METHODS (2012)
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
Peter V. Kharchenko et al.
NATURE (2011)
High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
Geoff Fudenberg et al.
NATURE BIOTECHNOLOGY (2011)
A three-dimensional model of the yeast genome
Zhijun Duan et al.
NATURE (2010)
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Erez Lieberman-Aiden et al.
SCIENCE (2009)
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
Marieke Simonis et al.
NATURE GENETICS (2006)
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Josee Dostie et al.
GENOME RESEARCH (2006)
Developmental control of nuclear size and shape by kugelkern and kurzkern
A Brandt et al.
CURRENT BIOLOGY (2006)
scylla and charybde, homologues are required for head of the human apoptotic gene RTP801, involution in Drosophila
A Scuderi et al.
DEVELOPMENTAL BIOLOGY (2006)
Origin of scaling behavior of protein packing density: A sequential Monte Carlo study of compact long chain polymers
JF Zhang et al.
JOURNAL OF CHEMICAL PHYSICS (2003)
Statistical geometry of packing defects of lattice chain polymer from enumeration and sequential Monte Carlo method
J Liang et al.
JOURNAL OF CHEMICAL PHYSICS (2002)
Computational modeling predicts the structure and dynamics of chromatin fiber
DA Beard et al.
STRUCTURE (2001)
Embryogenesis - Demethylation of the zygotic paternal genome
W Mayer et al.
NATURE (2000)
分享论文
