4.8 Article

Efficient assembly of nanopore reads via highly accurate and intact error correction

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Fast and accurate long-read assembly with wtdbg2

Jue Ruan et al.

NATURE METHODS (2020)

Article Biotechnology & Applied Microbiology

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Kishwar Shafin et al.

NATURE BIOTECHNOLOGY (2020)

Article Biotechnology & Applied Microbiology

Assembly of long, error-prone reads using repeat graphs

Mikhail Kolmogorov et al.

NATURE BIOTECHNOLOGY (2019)

Article Multidisciplinary Sciences

Selective single molecule sequencing and assembly of a human Y chromosome of African origin

Lukas F. K. Kuderna et al.

NATURE COMMUNICATIONS (2019)

Article Biochemical Research Methods

Comprehensive evaluation of non-hybrid genome assembly tools for third-generation PacBio long-read sequence data

Vasanthan Jayakumar et al.

BRIEFINGS IN BIOINFORMATICS (2019)

Article Biochemical Research Methods

Minimap2: pairwise alignment for nucleotide sequences

Heng Li

BIOINFORMATICS (2018)

Article Biotechnology & Applied Microbiology

Nanopore sequencing and assembly of a human genome with ultra-long reads

Miten Jain et al.

NATURE BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

Linear assembly of a human centromere on the Y chromosome

Miten Jain et al.

NATURE BIOTECHNOLOGY (2018)

Article Biochemical Research Methods

Accurate detection of complex structural variations using single-molecule sequencing

Fritz J. Sedlazeck et al.

NATURE METHODS (2018)

Article Multidisciplinary Sciences

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

Todd P. Michael et al.

NATURE COMMUNICATIONS (2018)

Review Biotechnology & Applied Microbiology

From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy

Franka J. Rang et al.

GENOME BIOLOGY (2018)

Article Biochemistry & Molecular Biology

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

Sergey Koren et al.

GENOME RESEARCH (2017)

Article Biochemical Research Methods

MECAT : fast mapping, error correction, and de novo assembly for single-molecule sequencing reads

Chuan-Le Xiao et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Edlib: a C/C plus plus library for fast, exact sequence alignment using edit distance

Martin Sosic et al.

BIOINFORMATICS (2017)

Article Biochemical Research Methods

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

Heng Li

BIOINFORMATICS (2016)

Article Multidisciplinary Sciences

De novo assembly and phasing of a Korean human genome

Jeong-Sun Seo et al.

NATURE (2016)

Article Biochemical Research Methods

Phased diploid genome assembly with single-molecule real-time sequencing

Chen-Shan Chin et al.

NATURE METHODS (2016)

Article Biochemical Research Methods

FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads

Ka-Kit Lam et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Phenolyzer: phenotype-based prioritization of candidate genes for human diseases

Hui Yang et al.

NATURE METHODS (2015)

Article Biotechnology & Applied Microbiology

LUMPY: a probabilistic framework for structural variant discovery

Ryan M. Layer et al.

GENOME BIOLOGY (2014)

Review Genetics & Heredity

Sequence assembly demystified

Niranjan Nagarajan et al.

NATURE REVIEWS GENETICS (2013)

Review Biochemistry & Molecular Biology

Genome-scale genetic manipulation methods for exploring bacterial molecular biology

Alla Gagarinova et al.

MOLECULAR BIOSYSTEMS (2012)

Article Biochemical Research Methods

Fast gapped-read alignment with Bowtie 2

Ben Langmead et al.

NATURE METHODS (2012)

Article Biochemical Research Methods

Aggressive assembly of pyrosequencing reads with mates

Jason R. Miller et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

The fragment assembly string graph

EW Myers

BIOINFORMATICS (2005)

Article Biotechnology & Applied Microbiology

Versatile and open software for comparing large genomes

S Kurtz et al.

GENOME BIOLOGY (2004)