相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Comparative Genomics Guides Elucidation of Vitamin B12 Biosynthesis in Novel Human-Associated Akkermansia Strains
Nina Kirmiz et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2020)
Flexible Cobamide Metabolism in Clostridioides (Clostridium) difficile 630 Δerm
Amanda N. Shelton et al.
JOURNAL OF BACTERIOLOGY (2020)
Specificity of cobamide remodeling, uptake and utilization in Vibrio cholerae
Amy T. Ma et al.
MOLECULAR MICROBIOLOGY (2020)
A mycobacterial ABC transporter mediates the uptake of hydrophilic compounds
S. Rempel et al.
NATURE (2020)
Sharing vitamins: Cobamides unveil microbial interactions
Olga M. Sokolovskaya et al.
SCIENCE (2020)
Cofactor Selectivity in Methylmalonyl Coenzyme A Mutase, a Model Cobamide-Dependent Enzyme
Olga M. Sokolovskaya et al.
MBIO (2019)
A next generation probiotic, Akkermansia muciniphila
Qixiao Zhai et al.
CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION (2019)
Thermococcus Eurythermalis Endonuclease IV Can Cleave Various Apurinic/Apyrimidinic Site Analogues in ssDNA and dsDNA
Wei-Wei Wang et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2019)
Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
Amanda N. Shelton et al.
ISME JOURNAL (2019)
The gut microbiome: Relationships with disease and opportunities for therapy
Juliana Durack et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2019)
To B12 or not to B12: Five questions on the role of cobalamin in host-microbial interactions
Carol A. Rowley et al.
PLOS PATHOGENS (2019)
The role of the microbiota in infectious diseases
Josie Libertucci et al.
NATURE MICROBIOLOGY (2019)
Guided cobamide biosynthesis for heterologous production of reductive dehalogenases
Torsten Schubert et al.
MICROBIAL BIOTECHNOLOGY (2019)
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization
Kazutaka Katoh et al.
BRIEFINGS IN BIOINFORMATICS (2019)
Microbial regulation of organismal energy homeostasis
Patrice D. Cani et al.
NATURE METABOLISM (2019)
Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease
Christoph Grander et al.
GUT (2018)
Purinyl-cobamide is a native prosthetic group of reductive dehalogenases
Jun Yan et al.
NATURE CHEMICAL BIOLOGY (2018)
Deciphering the trophic interaction between Akkermansia muciniphila and the butyrogenic gut commensal Anaerostipes caccae using a metatranscriptomic approach
Loo Wee Chia et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2018)
Crystal structure of the apurinic/apyrimidinic endonuclease IV from Mycobacterium tuberculosis
Wei Zhang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)
Selective Utilization of Benzimidazolyl-Norcobamides as Cofactors by the Tetrachloroethene Reductive Dehalogenase of Sulfurospirillum multivorans
Sebastian Keller et al.
JOURNAL OF BACTERIOLOGY (2018)
Functional and structural characterization of an ECF-type ABC transporter for vitamin B12
Joana A. Santos et al.
ELIFE (2018)
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies
Melanie Tramontano et al.
NATURE MICROBIOLOGY (2018)
Human gut Bacteroides capture vitamin B12 via cell surface-exposed lipoproteins
Aaron G. Wexler et al.
ELIFE (2018)
The Human Gut Microbiome - A Potential Controller of Wellness and Disease
Zhi Y. Kho et al.
FRONTIERS IN MICROBIOLOGY (2018)
X-ray structure of Arthrobacter globiformis M30 ketose 3-epimerase for the production of D-allulose from D-fructose
Hiromi Yoshida et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2018)
Formation of propionate and butyrate by the human colonic microbiota
Petra Louis et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice
Hubert Plovier et al.
NATURE MEDICINE (2017)
The Microbiome-Gut-Brain Axis in Health and Disease
Timothy G. Dinan et al.
GASTROENTEROLOGY CLINICS OF NORTH AMERICA (2017)
Akkermansia muciniphila and its role in regulating host functions
Muriel Derrien et al.
MICROBIAL PATHOGENESIS (2017)
Protein structure determination using metagenome sequence data
Sergey Ovchinnikov et al.
SCIENCE (2017)
Microbial Metabolic Networks at the Mucus Layer Lead to Diet-Independent Butyrate and Vitamin B12 Production by Intestinal Symbionts
Clara Belzer et al.
MBIO (2017)
Protective Effect of Akkermansia muciniphila against Immune-Mediated Liver Injury in a Mouse Model
Wenrui Wu et al.
FRONTIERS IN MICROBIOLOGY (2017)
Pili-like proteins of Akkermansia muciniphila modulate host immune responses and gut barrier function
Noora Ottman et al.
PLOS ONE (2017)
Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas
Xianfeng Guo et al.
BMC GENOMICS (2017)
Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle
Noora Ottman et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
An Amoebal Grazer of Cyanobacteria Requires Cobalamin Produced by Heterotrophic Bacteria
Amy T. Ma et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2017)
The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi
Jun Yan et al.
ISME JOURNAL (2016)
Biochemical characterization of a D-psicose 3-epimerase from Treponema primitia ZAS-1 and its application on enzymatic production of D-psicose
Wenli Zhang et al.
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE (2016)
From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites
Ara Koh et al.
CELL (2016)
Akkermansia Muciniphila Protects Against Atherosclerosis by Preventing Metabolic Endotoxemia-Induced Inflammation in Apoe-/- Mice
Jin Li et al.
CIRCULATION (2016)
Cyanobacteria and Eukaryotic Algae Use Different Chemical Variants of Vitamin B12
Katherine Emma Helliwell et al.
CURRENT BIOLOGY (2016)
Improving the Thermostability and Catalytic Efficiency of the D-Psicose 3-Epimerase from Clostridium bolteae ATCC BAA-613 Using Site-Directed Mutagenesis
Wenli Zhang et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2016)
The microbiota in adaptive immune homeostasis and disease
Kenya Honda et al.
NATURE (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Bifidobacteria and Their Role as Members of the Human Gut Microbiota
Amy O'Callaghan et al.
FRONTIERS IN MICROBIOLOGY (2016)
The microenvironment of injured murine gut elicits a local pro-restitutive microbiota
Ashfaqul Alam et al.
NATURE MICROBIOLOGY (2016)
D-Allulose Production from D-Fructose by Permeabilized Recombinant Cells of Corynebacterium glutamicum Cells Expressing D-Allulose 3-Epimerase Flavonifractor plautii
Chul-Soon Park et al.
PLOS ONE (2016)
Regulation of immune cell function by short-chain fatty acids
Renan Oliveira Correa et al.
CLINICAL & TRANSLATIONAL IMMUNOLOGY (2016)
Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer
Justus Reunanen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Characterization of a D-psicose 3-epimerase from Dorea sp CAG317 with an acidic pH optimum and a high specific activity
Wenli Zhang et al.
JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2015)
Anaerobic biosynthesis of the lower ligand of vitamin B12
Amrita B. Hazra et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities
Yujie Men et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
A D-psicose 3-epimerase with neutral pH optimum from Clostridium bolteae for D-psicose production: cloning, expression, purification, and characterization
Min Jia et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2014)
Regiospecific Formation of Cobamide Isomers Is Directed by CobT
Terence S. Crofts et al.
BIOCHEMISTRY (2014)
Structure-Guided Reprogramming of Human cGAS Dinucleotide Linkage Specificity
Philip J. Kranzusch et al.
CELL (2014)
Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut
Patrick H. Degnan et al.
CELL HOST & MICROBE (2014)
Vitamin B12 as a Modulator of Gut Microbial Ecology
Patrick H. Degnan et al.
CELL METABOLISM (2014)
An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
Na-Ri Shin et al.
GUT (2014)
Uncoupling of the apyrimidinic/apurinic endonucleolytic and 3'→5' exonucleolytic activities of the Nfo protein of Mycoplasma pneumoniae through mutation of specific amino acid residues
Silvia Estevao et al.
MICROBIOLOGY-SGM (2014)
Engineering acidic Streptomyces rubiginosus d-xylose isomerase by rational enzyme design
Mary Jo Waltman et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2014)
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing
Patrick J. Keeling et al.
PLOS BIOLOGY (2014)
Structural insight into L-ribulose 3-epimerase from Mesorhizobium loti
Keiko Uechi et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2013)
Characterization of a D-psicose-producing enzyme, D-psicose 3-epimerase, from Clostridium sp.
Wanmeng Mu et al.
BIOTECHNOLOGY LETTERS (2013)
Faecalibacterium prausnitzii and human intestinal health
S. Miquel et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Characterization of a Metal-Dependent D-Psicose 3-Epimerase from a Novel Strain, Desmospora sp 8437
Wenli Zhang et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2013)
Growth Inhibition of Sporomusa ovata by Incorporation of Benzimidazole Bases into Cobamides
Kenny C. Mok et al.
JOURNAL OF BACTERIOLOGY (2013)
Characterization of a Novel Metal-Dependent D-Psicose 3-Epimerase from Clostridium scindens 35704
Wenli Zhang et al.
PLOS ONE (2013)
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
Amandine Everard et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
A vitamin B12 transporter in Mycobacterium tuberculosis
Krishnamoorthy Gopinath et al.
OPEN BIOLOGY (2013)
Versatility in Corrinoid Salvaging and Remodeling Pathways Supports Corrinoid-Dependent Metabolism in Dehalococcoides mccartyi
Shan Yi et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
CD-HIT: accelerated for clustering the next-generation sequencing data
Limin Fu et al.
BIOINFORMATICS (2012)
The Impact of the Gut Microbiota on Human Health: An Integrative View
Jose C. Clemente et al.
CELL (2012)
d-Xylose Isomerase from a Marine Bacterium, Vibrio sp Strain XY-214, and d-Xylulose Production from β-1,3-Xylan
Yoshiaki Umemoto et al.
MARINE BIOTECHNOLOGY (2012)
Interactions Between the Microbiota and the Immune System
Lora V. Hooper et al.
SCIENCE (2012)
Crystal structures of D-psicose 3-epimerase from Clostridium cellulolyticum H10 and its complex with ketohexose sugars
Hsiu-Chien Chan et al.
PROTEIN & CELL (2012)
An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA
Ryuichi Asano et al.
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2011)
Cloning and analysis of the xylAB operon and characterization of xylose isomerase from Thermoanaerobacter ethanolicus
Lijuan Fan et al.
BIOTECHNOLOGY LETTERS (2011)
Cloning, Expression, and Characterization of a D-Psicose 3-Epimerase from Clostridium cellulolyticum H10
Wanmeng Mu et al.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY (2011)
Transcription Antitermination by a Phosphorylated Response Regulator and Cobalamin-Dependent Termination at a B12 Riboswitch Contribute to Ethanolamine Utilization in Enterococcus faecalis
Kris Ann Baker et al.
JOURNAL OF BACTERIOLOGY (2011)
Discovery of epoxyqueuosine (oQ) reductase reveals parallels between halorespiration and tRNA modification
Zachary D. Miles et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader Akkermansia muciniphila
Muriel Derrien et al.
FRONTIERS IN MICROBIOLOGY (2011)
Structure of the endonuclease IV homologue from Thermotoga maritima in the presence of active-site divalent metal ions
Stephen J. Tomanicek et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2010)
Mutational analysis of the active site residues of a d-psicose 3-epimerase from Agrobacterium tumefaciens
Hye-Jung Kim et al.
BIOTECHNOLOGY LETTERS (2010)
Methyladeninylcobamide functions as the cofactor of methionine synthase in a Cyanobacterium, Spirulina platensis NIES-39
Yuri Tanioka et al.
FEBS LETTERS (2010)
Large-scale Domain Dynamics and Adenosylcobalamin Reorientation Orchestrate Radical Catalysis in Ornithine 4,5-Aminomutase
Kirsten R. Wolthers et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Crystal Structures of Ethanolamine Ammonia-lyase Complexed with Coenzyme B12 Analogs and Substrates
Naoki Shibata et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
A new pathway for the synthesis of α-ribazole-phosphate in Listeria innocua
Michael J. Gray et al.
MOLECULAR MICROBIOLOGY (2010)
The endonuclease IV family of apurinic/apyrimidinic endonucleases
James M. Daley et al.
MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH (2010)
Identification of cobalamin and cobalamin analogues along the gastrointestinal tract of dairy cows
Christiane L. Girard et al.
ARCHIVES OF ANIMAL NUTRITION (2009)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Apparent ruminal synthesis and intestinal disappearance of vitamin B12 and its analogs in dairy cows
C. L. Girard et al.
JOURNAL OF DAIRY SCIENCE (2009)
The cobinamide amidohydrolase (cobyric acid-forming) CbiZ enzyme: a critical activity of the cobamide remodelling system of Rhodobacter sphaeroides
Michael J. Gray et al.
MOLECULAR MICROBIOLOGY (2009)
Enzymatic assembly of DNA molecules up to several hundred kilobases
Daniel G. Gibson et al.
NATURE METHODS (2009)
Identification and quantitation of cobalamin and cobalamin analogues in human feces
Robert H. Allen et al.
AMERICAN JOURNAL OF CLINICAL NUTRITION (2008)
Structure of L-Xylulose-5-Phosphate 3-Epimerase (UlaE) from the Anaerobic L-Ascorbate Utilization Pathway of Escherichia coli: Identification of a Novel Phosphate Binding Motif within a TIM Barrel Fold
Rong Shi et al.
JOURNAL OF BACTERIOLOGY (2008)
The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins
Michael J. Gray et al.
MOLECULAR MICROBIOLOGY (2008)
DNA apurinic-apyrimidinic site binding and excision by endonuclease IV
Elsa D. Garcin et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2008)
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
Harry Sokol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Crystal structures of D-tagatose 3-epimerase from Pseudomonas cichorii and its complexes with D-tagatose and D-fructose
Hirorni Yoshida et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Conversion of cobinarnide into adenosylcobamide in bacteria and archaea
Jorge C. Escalante-Semerena
JOURNAL OF BACTERIOLOGY (2007)
Insight into the mechanism of biological methanol activation based on the crystal structure of the methanol-cobalamin methyltransferase complex
Christoph H. Hagemeier et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Structural insights into methyltransfer reactions of a corrinoid iron-sulfur protein involved in acetyl-CoA synthesis
Tatiana Svetlitchnaia et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Sinorhizobium meliloti bluB is necessary for production of 5,6-dimethylbenzimidazole, the lower ligand of B12
GRO Campbell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Genetic modification of Bacillus subtilis for production of D-chiro-inositol, an investigational drug candidate for treatment of type 2 diabetes and polycystic ovary syndrome
K Yoshida et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Characterization of an Agrobacterium tumefaciens D-psicose 3-epimerase that converts D-fructose to D-psicose
HJ Kim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Crystal structure of D-psicose 3-epimerase from Agrobacterium tumefaciens and its complex with true substrate D-fructose: A pivotal role of metal in catalysis, an active site for the non-phosphorylated substrate, and its conformational changes
Kwangsoo Kim et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba et al.
MOLECULAR SYSTEMS BIOLOGY (2006)
Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase
JC Evans et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Akkermansia muciniphila gen. nov., sp nov., a human intestinal mucin-degrading bacterium
M Derrien et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2004)
Locking mechanism preventing radical damage in the absence of substrate,, as revealed by the x-ray structure of lysine 5,6-aminomutase
F Berkovitch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
YqfS from Bacillus subtilis is a spore protein and a new functional member of the type IV apurinic/apyrimidinic-endonuclease family
JM Salas-Pacheco et al.
JOURNAL OF BACTERIOLOGY (2003)
The crystal structure of coenzyme B12-dependent glycerol dehydratase in complex with cobalamin and propane-1,2-diol
M Yamanishi et al.
EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)
Crystal structure of Bacillus subtilis IolI shows endonuclase IV fold with altered Zn binding
RG Zhang et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2002)
Elucidation of the coenzyme binding mode of further B12-dependent enzymes using a base-off analogue of coenzyme B12
L Poppe et al.
JOURNAL OF MOLECULAR CATALYSIS B-ENZYMATIC (2000)
Crystal structure of a methyltetrahydrofolate- and corrinoid-dependent methyltransferase
T Doukov et al.
STRUCTURE (2000)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)