4.8 Article

WikiPathways: connecting communities

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps

Hasan Balci et al.

Summary: Newt is a web-based tool developed for viewing, constructing and analyzing biological maps in standard formats like SBGN, SBML and SIF. It meets the considerable need for sophisticated pathway viewers and editors using the latest visualization techniques and libraries.

BIOINFORMATICS (2021)

Article Biochemistry & Molecular Biology

Estimating cumulative point prevalence of rare diseases: analysis of the Orphanet database

Stephanie Nguengang Wakap et al.

EUROPEAN JOURNAL OF HUMAN GENETICS (2020)

Review Biochemical Research Methods

Simultaneous Enrichment Analysis of all Possible Gene-sets: Unifying Self-Contained and Competitive Methods

Mitra Ebrahimpoor et al.

BRIEFINGS IN BIOINFORMATICS (2020)

Article Biochemical Research Methods

MINERVA API and plugins: opening molecular network analysis and visualization to the community

David Hoksza et al.

BIOINFORMATICS (2019)

Article Biochemistry & Molecular Biology

g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)

Uku Raudvere et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemistry & Molecular Biology

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs

Yuxing Liao et al.

NUCLEIC ACIDS RESEARCH (2019)

Article Biochemical Research Methods

PathMe: merging and exploring mechanistic pathway knowledge

Daniel Domingo-Fernandez et al.

BMC BIOINFORMATICS (2019)

Article Genetics & Heredity

The Impact of Pathway Database Choice on Statistical Enrichment Analysis and Predictive Modeling

Sarah Mubeen et al.

FRONTIERS IN GENETICS (2019)

Editorial Material Medicine, Research & Experimental

The Biomedical Data Translator Program: Conception, Culture, and Community

Karamarie Fecho et al.

CTS-CLINICAL AND TRANSLATIONAL SCIENCE (2019)

Article Biochemistry & Molecular Biology

Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes

Birgit H. M. Meldal et al.

NUCLEIC ACIDS RESEARCH (2019)

Editorial Material Biochemistry & Molecular Biology

LIPID MAPS: Serving the next generation of lipid researchers with tools, resources, data, and training

Valerie B. O'Donnell et al.

SCIENCE SIGNALING (2019)

Article Genetics & Heredity

Knowledge base and mini-expert platform for the diagnosis of inborn errors of metabolism

Jessica J. Y. Lee et al.

GENETICS IN MEDICINE (2018)

Article Biochemistry & Molecular Biology

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

Denise N. Slenter et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Biochemistry & Molecular Biology

Europe PMC in 2017

Maria Levchenko et al.

NUCLEIC ACIDS RESEARCH (2018)

Proceedings Paper Computer Science, Interdisciplinary Applications

Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data

Tobias Kuhn et al.

2018 IEEE 14TH INTERNATIONAL CONFERENCE ON E-SCIENCE (E-SCIENCE 2018) (2018)

Article Biochemical Research Methods

PyBEL: a computational framework for Biological Expression Language

Charles Tapley Hoyt et al.

BIOINFORMATICS (2018)

Article Biochemistry & Molecular Biology

WikiPathways: capturing the full diversity of pathway knowledge

Martina Kutmon et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

Maxim V. Kuleshov et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemical Research Methods

Reactome from a WikiPathways Perspective

Anwesha Bohler et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Biochemical Research Methods

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

Andra Waagmeester et al.

PLOS COMPUTATIONAL BIOLOGY (2016)

Article Multidisciplinary Sciences

Comment: The FAIR Guiding Principles for scientific data management and stewardship

Mark D. Wilkinson et al.

SCIENTIFIC DATA (2016)

Article Biochemical Research Methods

PathVisio 3: An Extendable Pathway Analysis Toolbox

Martina Kutmon et al.

PLOS COMPUTATIONAL BIOLOGY (2015)

Article Biochemistry & Molecular Biology

WikiPathways: building research communities on biological pathways

Thomas Kelder et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biotechnology & Applied Microbiology

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

Guangchuang Yu et al.

OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY (2012)

Article Biochemical Research Methods

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA

Atanas Kamburov et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

Martijn P. van Iersel et al.

BMC BIOINFORMATICS (2010)

Article Environmental Sciences

ADVERSE OUTCOME PATHWAYS: A CONCEPTUAL FRAMEWORK TO SUPPORT ECOTOXICOLOGY RESEARCH AND RISK ASSESSMENT

Gerald T. Ankley et al.

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY (2010)

Article Biotechnology & Applied Microbiology

NetPath: a public resource of curated signal transduction pathways

Kumaran Kandasamy et al.

GENOME BIOLOGY (2010)

Editorial Material Biochemistry & Molecular Biology

WikiPathways: Pathway editing for the people

Alexander R. Pico et al.

PLOS BIOLOGY (2008)

Article Multidisciplinary Sciences

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

A Subramanian et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Characterization of HSCD5, a novel human stearoyl-CoA desaturase unique to primates

J Wang et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2005)