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The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible
Damian Szklarczyk et al.
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Simon Renny-Byfield et al.
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Novel technologies in doubled haploid line development
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Matthew D. Schultz et al.
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Mihaela Pertea et al.
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Daniel Koenig et al.
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STAR: ultrafast universal RNA-seq aligner
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Ben Langmead et al.
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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
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BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
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Veronique Chague et al.
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Zheng Yu et al.
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Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
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Haibao Tang et al.
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Shawn J. Cokus et al.
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Perspective - Genomic plasticity and the diversity of polyploid plants
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Brian C. Thomas et al.
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Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae)
JC Pires et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2004)
Major ecological transitions in wild sunflowers facilitated by hybridization
LH Rieseberg et al.
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KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)