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Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics
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George Rosenberger et al.
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Juan Antonio Vizcaino et al.
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OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Hannes L. Roest et al.
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The Perseus computational platform for comprehensive analysis of (prote)omics data
Stefka Tyanova et al.
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Scarlet Beck et al.
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Mark Larance et al.
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Aivett Bilbao et al.
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Dominic Helm et al.
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Ute Distler et al.
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F. A. Fernandez-Lima et al.
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HX Wang et al.
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