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Joe M. Segal et al.
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Patrycja Nowak-Sliwinska et al.
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Huaiyu Mi et al.
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Chen Varol et al.
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Elham Azizi et al.
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Diether Lambrechts et al.
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Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq
Johannes W. Bagnoli et al.
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Swati Parekh et al.
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Leeat Keren et al.
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Andreas E. Moor et al.
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Paired-cell sequencing enables spatial gene expression mapping of liver endothelial cells
Keren Bahar Halpern et al.
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Sonya A. MacParland et al.
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J. Gray Camp et al.
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Dll4 and Notch signalling couples sprouting angiogenesis and artery formation
Mara E. Pitulescu et al.
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Michele de Palma et al.
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Andriy Marusyk et al.
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Douglas Hanahan et al.
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Tushar Patel
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Ahmad Raza et al.
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Christoph Gille et al.
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Silvia Goldoni et al.
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Yingqun Wang
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Co-evolution of tumor cells and their microenvironment
Kornelia Polyak et al.
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Shinji Yamamoto et al.
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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Endothelial/pericyte interactions
A Armulik et al.
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Induction of tumor angiogenesis by Slit-Robo signaling and inhibition of cancer growth by blocking Robo activity
B Wang et al.
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Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
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R Milo et al.
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