相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。EnTAP: Bringing faster and smarter functional annotation to non-model eukaryotic transcriptomes
Alexander J. Hart et al.
MOLECULAR ECOLOGY RESOURCES (2020)
The Moss Physcomitrium (Physcomitrella) patens: A Model Organism for Non-Seed Plants
Stefan A. Rensing et al.
PLANT CELL (2020)
Transcriptional Landscapes of Divergent Sporophyte Development in Two Mosses,Physcomitrium (Physcomitrella) patensandFunaria hygrometrica
Alexander Kirbis et al.
FRONTIERS IN PLANT SCIENCE (2020)
Rapid evolution of protein diversity by de novo origination in Oryza
Li Zhang et al.
NATURE ECOLOGY & EVOLUTION (2019)
Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella, Physcomitridium and Aphanorrhegma
Rafael Medina et al.
JOURNAL OF SYSTEMATICS AND EVOLUTION (2019)
Genome Sequencing of Pleurozium schreberi: The Assembled and Annotated Draft Genome of a Pleurocarpous Feather Moss
Eric R. A. Pederson et al.
G3-GENES GENOMES GENETICS (2019)
A KNOX-Cytokinin Regulatory Module Predates the Origin of Indeterminate Vascular Plants
Yoan Coudert et al.
CURRENT BIOLOGY (2019)
One thousand plant transcriptomes and the phylogenomics of green plants
James H. Leebens-Mack et al.
NATURE (2019)
Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants
Xin Qiao et al.
GENOME BIOLOGY (2019)
Efficient and modular CRISPR-Cas9 vector system for Physcomitrella patens
Darren R. Mallett et al.
PLANT DIRECT (2019)
Antheridial development in the moss Physcomitrella patens: implications for understanding stem cells in mosses
Rumiko Kofuji et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2018)
Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae
Rafael Medina et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2018)
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
Daniel Lang et al.
PLANT JOURNAL (2018)
The timescale of early land plant evolution
Jennifer L. Morris et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Desiccation tolerance in bryophytes: the rehydration proteomes of Bryum argenteum provide insights into the resuscitation mechanism
Gao Bei et al.
JOURNAL OF ARID LAND (2018)
RNAzol® RT: a new single-step method for isolation of RNA
Piotr Chomczynski et al.
NATURE METHODS (2018)
Ecology of desiccation tolerance in bryophytes: A conceptual framework and methodology
Lloyd R. Stark
BRYOLOGIST (2017)
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2016)
Genomic scanning using AFLP to detect loci under selection in the moss Funaria hygrometrica along a climate gradient in the Sierra Nevada Mountains, Spain
M. Magdy et al.
PLANT BIOLOGY (2016)
On the Origin of De Novo Genes in Arabidopsis thaliana Populations
Zi-Wen Li et al.
GENOME BIOLOGY AND EVOLUTION (2016)
PEAT MOSS-LIKE VEGETATIVE REMAINS FROM ORDOVICIAN CARBONATES
Christopher Cardona-Correa et al.
INTERNATIONAL JOURNAL OF PLANT SCIENCES (2016)
A phylotranscriptomic analysis of gene family expansion and evolution in the largest order of pleurocarpous mosses (Hypnales, Bryophyta)
Matthew G. Johnson et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2016)
A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants
Carlos Ortiz-Ramirez et al.
MOLECULAR PLANT (2016)
Open questions in the study of de novo genes: what, how and why
Aoife McLysaght et al.
NATURE REVIEWS GENETICS (2016)
Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
Nicolas Devos et al.
NEW PHYTOLOGIST (2016)
Origin and function of stomata in the moss Physcomitrella patens
Caspar C. Chater et al.
NATURE PLANTS (2016)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
De novo transcriptome characterization and gene expression profiling of the desiccation tolerant moss Bryum argenteum following rehydration
Bei Gao et al.
BMC GENOMICS (2015)
Symbiotic options for the conquest of land
Katie J. Field et al.
TRENDS IN ECOLOGY & EVOLUTION (2015)
De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome
Peter Szoevenyi et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Gene Ontology Consortium: going forward
J. A. Blake et al.
NUCLEIC ACIDS RESEARCH (2015)
Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex
Anna K. Beike et al.
BMC EVOLUTIONARY BIOLOGY (2014)
Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts
B. Laenen et al.
NATURE COMMUNICATIONS (2014)
Epiphytic leafy liverworts diversified in angiosperm-dominated forests
Kathrin Feldberg et al.
SCIENTIFIC REPORTS (2014)
Data access for the 1,000 Plants (1KP) project
Naim Matasci et al.
GIGASCIENCE (2014)
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin et al.
BIOINFORMATICS (2013)
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3
Mira V. Han et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
The Moss Physcomitrella patens Reproductive Organ Development Is Highly Organized, Affected by the Two SHI/STY Genes and by the Level of Active Auxin in the SHI/STY Expression Domain
Katarina Landberg et al.
PLANT PHYSIOLOGY (2013)
Physcomitrella patens: a model for tip cell growth and differentiation
Luis Vidali et al.
CURRENT OPINION IN PLANT BIOLOGY (2012)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens
Lihong Xiao et al.
BMC PLANT BIOLOGY (2011)
Generation-Biased Gene Expression in a Bryophyte Model System
Peter Szoevenyi et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
Establishing a time-scale for plant evolution
John T. Clarke et al.
NEW PHYTOLOGIST (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Evolutionary crossroads in developmental biology: Physcomitrella patens
Michael J. Prigge et al.
DEVELOPMENT (2010)
Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?
A. Jonathan Shaw et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2010)
Gene ontology analysis for RNA-seq: accounting for selection bias
Matthew D. Young et al.
GENOME BIOLOGY (2010)
Local Cues and Asymmetric Cell Divisions Underpin Body Plan Transitions in the Moss Physcomitrella patens
C. Jill Harrison et al.
CURRENT BIOLOGY (2009)
Bayesian reconstruction of ancestral expression of the LEA gene families reveals propagule-derived desiccation tolerance in resurrection plants
Kirsten M. Fisher
AMERICAN JOURNAL OF BOTANY (2008)
Genetic structure and genealogy in the Sphagnum subsecundum complex (Sphagnaceae: Bryophyta)
A. J. Shaw et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)
An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens
Stefan A. Rensing et al.
BMC EVOLUTIONARY BIOLOGY (2007)
A copper chaperone for superoxide dismutase that confers three types of copper/zinc superoxide dismutase activity in Arabidopsis
CC Chu et al.
PLANT PHYSIOLOGY (2005)
Automated generation of heuristics for biological sequence comparison
GS Slater et al.
BMC BIOINFORMATICS (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
What do we know about hybridization among bryophytes in nature?
R Natcheva et al.
CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Arabidopsis proteins containing similarity to the universal stress protein domain of bacteria
D Kerk et al.
PLANT PHYSIOLOGY (2003)
Poikilohydry and homoihydry: antithesis or spectrum of possibilities?
MCF Proctor et al.
NEW PHYTOLOGIST (2002)
Calcium signaling through protein kinases. The Arabidopsis calcium-dependent protein kinase gene family
SH Cheng et al.
PLANT PHYSIOLOGY (2002)
Abiotic stress signalling pathways: specificity and cross-talk
H Knight et al.
TRENDS IN PLANT SCIENCE (2001)
Riboflavin induces disease resistance in plants by activating a novel signal transduction pathway
H Dong et al.
PHYTOPATHOLOGY (2000)
分享论文
