4.7 Article

Landscape genomics of Quercus lobata reveals genes involved in local climate adaptation at multiple spatial scales

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Adaptational lag to temperature in valley oak (Quercus lobata) can be mitigated by genome-informed assisted gene flow

Luke Browne et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)

Article Biodiversity Conservation

New insights into adaptation and population structure of cork oak using genotyping by sequencing

Francisco Pina-Martins et al.

GLOBAL CHANGE BIOLOGY (2019)

Article Biochemistry & Molecular Biology

Comparing methods for detecting multilocus adaptation with multivariate genotype-environment associations

Brenna R. Forester et al.

MOLECULAR ECOLOGY (2018)

Review Forestry

RADseq approaches and applications for forest tree genetics

Thomas L. Parchman et al.

TREE GENETICS & GENOMES (2018)

Article Plant Sciences

Oak genome reveals facets of long lifespan

Christophe Plomion et al.

NATURE PLANTS (2018)

Article Biochemistry & Molecular Biology

Breaking RAD: an evaluation of the utility of restriction site-associated DNA sequencing for genome scans of adaptation

David B. Lowry et al.

MOLECULAR ECOLOGY RESOURCES (2017)

Review Evolutionary Biology

Time to get moving: assisted gene flow of forest trees

Sally N. Aitken et al.

EVOLUTIONARY APPLICATIONS (2016)

Article Biochemistry & Molecular Biology

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Christophe Plomion et al.

MOLECULAR ECOLOGY RESOURCES (2016)

Article Biochemistry & Molecular Biology

The Pfam protein families database: towards a more sustainable future

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients

Paul F. Gugger et al.

MOLECULAR ECOLOGY (2016)

Article Genetics & Heredity

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Nee (Fagaceae)

Victoria L. Sork et al.

G3-GENES GENOMES GENETICS (2016)

Article Plant Sciences

Landscape genetics and population structure in Valley Oak (Quercus lobata Nee)

Mary V. Ashley et al.

AMERICAN JOURNAL OF BOTANY (2015)

Article Biotechnology & Applied Microbiology

Evolutionary insights from de novo transcriptome assembly and SNP discovery in California white oaks

Shawn J. Cokus et al.

BMC GENOMICS (2015)

Article Biochemistry & Molecular Biology

Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations

Alexander Platt et al.

MOLECULAR ECOLOGY (2015)

Review Biochemistry & Molecular Biology

A practical guide to environmental association analysis in landscape genomics

Christian Rellstab et al.

MOLECULAR ECOLOGY (2015)

Article Biochemistry & Molecular Biology

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

Katie E. Lotterhos et al.

MOLECULAR ECOLOGY (2015)

Article Ecology

LEA: An R package for landscape and ecological association studies

Eric Frichot et al.

METHODS IN ECOLOGY AND EVOLUTION (2015)

Article Genetics & Heredity

Fast and Efficient Estimation of Individual Ancestry Coefficients

Eric Frichot et al.

GENETICS (2014)

Review Biochemistry & Molecular Biology

Isolation by environment

Ian J. Wang et al.

MOLECULAR ECOLOGY (2014)

Article Biochemistry & Molecular Biology

Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests

Katie E. Lotterhos et al.

MOLECULAR ECOLOGY (2014)

Review Ecology

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

Sally N. Aitken et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Article Biochemistry & Molecular Biology

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

Eric Frichot et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Review Genetics & Heredity

Ecological genomics of local adaptation

Outi Savolainen et al.

NATURE REVIEWS GENETICS (2013)

Article Biochemistry & Molecular Biology

Local Adaptation in the Flowering-Time Gene Network of Balsam Poplar, Populus balsamifera L.

Stephen R. Keller et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation

Stephanie Manel et al.

MOLECULAR ECOLOGY (2012)

Article Biochemistry & Molecular Biology

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

Philippe Lamesch et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemical Research Methods

The variant call format and VCFtools

Petr Danecek et al.

BIOINFORMATICS (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Multidisciplinary Sciences

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

Robert J. Elshire et al.

PLOS ONE (2011)

Article Genetics & Heredity

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences

Julian M. Catchen et al.

G3-GENES GENOMES GENETICS (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina

S. Manel et al.

MOLECULAR ECOLOGY (2010)

Article Biochemical Research Methods

Conditional variable importance for random forests

Carolin Strobl et al.

BMC BIOINFORMATICS (2008)

Review Ecology

Gene flow and local adaptation in trees

Outi Savolainen et al.

ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2007)

Article Biochemistry & Molecular Biology

Contrasting patterns of historical colonization in white oaks (Quercus spp.) in California and Europe

Delphine Grivet et al.

MOLECULAR ECOLOGY (2006)

Article Multidisciplinary Sciences

Nucleotide diversity and linkage disequilibrium in loblolly pine

GR Brown et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)